DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ref1 and rbm38

DIOPT Version :10

Sequence 1:NP_651968.1 Gene:Ref1 / 44029 FlyBaseID:FBgn0010774 Length:266 Species:Drosophila melanogaster
Sequence 2:NP_001103597.1 Gene:rbm38 / 333991 ZFINID:ZDB-GENE-030131-5923 Length:234 Species:Danio rerio


Alignment Length:111 Identity:30/111 - (27%)
Similarity:55/111 - (49%) Gaps:11/111 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   109 TRLIVGNLDYGVSNTDIKELFNDFGPIKKAAVHYDR-SGRSLGTADVIFERRADALKAIKQYHGV 172
            |::.||.|.|..::..:::.|..||.|.:|.|..|| :|:|.|...|....::.|.:|.|..:.:
Zfish    25 TKIFVGGLPYHTTDASLRKYFETFGDIDEAVVITDRQTGKSRGYGFVTMMDKSAAERACKDPNPI 89

  Fly   173 PLDGRPMTIQLA---------VSDVAVLTRPVAATDVKRRVGGTAP 209
             :|||...:.||         ::..:...:.|..|.::|:.|.:.|
Zfish    90 -IDGRKANVNLAYLGAKPRSPLTGYSTGVQQVHPTLIQRQYGLSQP 134

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ref1NP_651968.1 sex-lethal 31..>184 CDD:273740 23/75 (31%)
RRM_THOC4 109..183 CDD:410081 23/74 (31%)
FoP_duplication 202..>260 CDD:464005 3/8 (38%)
rbm38NP_001103597.1 RRM_RBM24_RBM38_like 25..100 CDD:409818 23/75 (31%)
PABP-1234 <37..215 CDD:130689 25/99 (25%)

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