DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ref1 and CG11454

DIOPT Version :10

Sequence 1:NP_651968.1 Gene:Ref1 / 44029 FlyBaseID:FBgn0010774 Length:266 Species:Drosophila melanogaster
Sequence 2:NP_608497.1 Gene:CG11454 / 33175 FlyBaseID:FBgn0031224 Length:238 Species:Drosophila melanogaster


Alignment Length:72 Identity:22/72 - (30%)
Similarity:35/72 - (48%) Gaps:0/72 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly   111 LIVGNLDYGVSNTDIKELFNDFGPIKKAAVHYDRSGRSLGTADVIFERRADALKAIKQYHGVPLD 175
            |..||||..|:...:.|:|...|||:...:..|.:||......|.::|......|:..|.|:.|.
  Fly    72 LFCGNLDERVTEEILYEVFLQAGPIEGVRIPTDNNGRPRNFGFVTYQRLCAVPFALDLYQGLELF 136

  Fly   176 GRPMTIQ 182
            .:.:||:
  Fly   137 QKKVTIK 143

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ref1NP_651968.1 sex-lethal 31..>184 CDD:273740 22/72 (31%)
RRM_THOC4 109..183 CDD:410081 22/72 (31%)
FoP_duplication 202..>260 CDD:464005
CG11454NP_608497.1 RRM_RBM7_like 69..143 CDD:409773 21/70 (30%)
Blue background indicates that the domain is not in the aligned region.

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