DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ref1 and hnrnpa0l

DIOPT Version :10

Sequence 1:NP_651968.1 Gene:Ref1 / 44029 FlyBaseID:FBgn0010774 Length:266 Species:Drosophila melanogaster
Sequence 2:NP_001268650.1 Gene:hnrnpa0l / 321899 ZFINID:ZDB-GENE-030131-618 Length:302 Species:Danio rerio


Alignment Length:134 Identity:36/134 - (26%)
Similarity:61/134 - (45%) Gaps:29/134 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   110 RLIVGNLDYGVSNTDIKELFNDFGPIKKAAVHYDR-SGRSLGTADVIFERRADALKA-IKQYHGV 172
            ::.||.|...:.:..:::.|:.||||:||.|..|: :|:..|...|.|:....|.|| :.::|.:
Zfish    98 KIFVGGLKDDIEDEHLQDYFSQFGPIEKAQVITDKDTGKKRGFGFVYFDDNDSADKAVVMKFHSI 162

  Fly   173 PLDGRPMTIQLAVSDVAVLTRPVAATDVKRRVGGTAPTSFKRGGGQAGGTARRGFKRPVGGKPAA 237
              .|..:.::.|::              |:.:..|       |||: ||...||..|   |....
Zfish   163 --CGHKVEVKKALT--------------KQEMQST-------GGGR-GGRGGRGMGR---GSGFG 200

  Fly   238 GGQR 241
            ||.|
Zfish   201 GGGR 204

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ref1NP_651968.1 sex-lethal 31..>184 CDD:273740 21/75 (28%)
RRM_THOC4 109..183 CDD:410081 21/74 (28%)
FoP_duplication 202..>260 CDD:464005 13/40 (33%)
hnrnpa0lNP_001268650.1 RRM1_hnRNPA0 4..82 CDD:409764
RRM_SF 98..177 CDD:473069 23/94 (24%)
Blue background indicates that the domain is not in the aligned region.

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