Protein Alignment Ref1 and Poldip3

DIOPT Version :9

• Sequence 1: NP_651968.1
• Gene: Ref1 / 44029
• FlyBaseID: FBgn0010774
• Length: 266
• Species: Drosophila melanogaster
• Sequence 2: NP_001123978.1
• Gene: Poldip3 / 315170
• RGDID: 1311073
• Length: 420
• Species: Rattus norvegicus
• Alignment Length: 189
• Identity: 50/189 - (26%)
• Similarity: 74/189 - (39%)
• Gaps: 42/189 - (22%)

  Fly    55 SPRKPGSVLKGPRGGVAAGAVQKAKFPRGDVNSAWKHDMYDGPKRGAVGGGSGPTRLIVGNLDYG 119
            :|..|.||.......::...|.|.:.|:            :.|....|......|::.|.||...
  Rat   238 APVLPSSVRTKALTNMSRTLVNKEELPK------------ELPPAEPVLSPLEGTKMTVNNLHPR 290

  Fly   120 VSNTDIKELFNDFGPIKKAAVHYDRSGRSLGTADVIFERRADALKAIKQYHGVPLDGRPMTIQL- 183
            |:..||.|||...|.:|:|.:.:.      |.|:|:|.::.||:.|.|:|:...|||:||...|
  Rat   291 VTEEDIVELFCVCGALKRARLVHP------GVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNLH 349

  Fly   184 -----AVSDVAVLTRPVAATDVKRRVGGTAPTSFKRGGGQAGGTARRGFKRPVGGKPAA 237
                 ..||..:|.|...:..||:.                ....|||  .||...|.|
  Rat   350 MNGNVITSDQPILLRLSDSPSVKKE----------------SELPRRG--NPVSSNPPA 390

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ref1	NP_651968.1	RRM	<108..>187	CDD:223796	28/84 (33%)
		RRM_THOC4	109..183	CDD:241124	27/73 (37%)
		FoP_duplication	214..>265	CDD:290576	7/24 (29%)
Poldip3	NP_001123978.1	RRM	216..406	CDD:223796	50/189 (26%)
		RRM_SKAR	280..348	CDD:241125	27/73 (37%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG0533
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR19965
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	3	2.910