DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ref1 and tho4

DIOPT Version :10

Sequence 1:NP_651968.1 Gene:Ref1 / 44029 FlyBaseID:FBgn0010774 Length:266 Species:Drosophila melanogaster
Sequence 2:NP_595161.1 Gene:tho4 / 2540184 PomBaseID:SPBC106.12C Length:274 Species:Schizosaccharomyces pombe


Alignment Length:293 Identity:71/293 - (24%)
Similarity:98/293 - (33%) Gaps:109/293 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 IEMSLDDIIKSTRSQKKPQAARGGPGG-----ARKTGGQQRFAGGAR------RGGANAGGSPRK 58
            :|.|||:||....:            |     :|:.|.|.|.:..:|      |.......||. 
pombe     3 LEKSLDEIINERTN------------GFDHKHSRRRGSQNRISKKSRLTYKFKRASKEHNSSPD- 54

  Fly    59 PGSVLKGPRGGVAAGAVQKAKFPRGDVNSAWKHDM---YDGPKRGAVGGGSGPTRL--------- 111
                 .||                      |:||:   .|...|        .|.|         
pombe    55 -----DGP----------------------WQHDLDQEQDAHPR--------TTHLQKRQHSENR 84

  Fly   112 ---IVGNLDYGVSNTDIKELFNDFGPIKKAAVHYDRSGRSLGTADVIFERRADALKAIKQYHGVP 173
               .|.||.|.|...|:..||.:|.|| :..::|||:|||.|:.||.||...||..|.|......
pombe    85 FGVRVENLHYQVLEKDVLSLFENFHPI-RVIMNYDRAGRSEGSCDVYFETSQDAEDAQKTLQSTN 148

  Fly   174 LDG--------RPMTIQLAVSDVAVLTRPVAATDVKRRVGGTAPTSFKRGGGQAGGTARRGFKRP 230
            |.|        .|.::...:||:     |.:|....|                 ...:.|||.|.
pombe   149 LKGSEIQISKKSPPSLFDRISDM-----PHSARKPSR-----------------SSRSNRGFNRS 191

  Fly   231 VGGKPAAGGQRRERKAPPTA---EELDAELDSY 260
             ..|.....:...:|:...:   |:||.|||.|
pombe   192 -SKKDDRSFRSSSKKSSNNSISHEDLDKELDEY 223

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ref1NP_651968.1 sex-lethal 31..>184 CDD:273740 47/186 (25%)
RRM_THOC4 109..183 CDD:410081 31/93 (33%)
FoP_duplication 202..>260 CDD:464005 13/60 (22%)
tho4NP_595161.1 RRM_SF 87..156 CDD:473069 28/69 (41%)

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