DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ref1 and SPBC106.12c

DIOPT Version :9

Sequence 1:NP_651968.1 Gene:Ref1 / 44029 FlyBaseID:FBgn0010774 Length:266 Species:Drosophila melanogaster
Sequence 2:NP_595161.1 Gene:SPBC106.12c / 2540184 PomBaseID:SPBC106.12c Length:274 Species:Schizosaccharomyces pombe


Alignment Length:293 Identity:71/293 - (24%)
Similarity:98/293 - (33%) Gaps:109/293 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 IEMSLDDIIKSTRSQKKPQAARGGPGG-----ARKTGGQQRFAGGAR------RGGANAGGSPRK 58
            :|.|||:||....:            |     :|:.|.|.|.:..:|      |.......||. 
pombe     3 LEKSLDEIINERTN------------GFDHKHSRRRGSQNRISKKSRLTYKFKRASKEHNSSPD- 54

  Fly    59 PGSVLKGPRGGVAAGAVQKAKFPRGDVNSAWKHDM---YDGPKRGAVGGGSGPTRL--------- 111
                 .||                      |:||:   .|...|        .|.|         
pombe    55 -----DGP----------------------WQHDLDQEQDAHPR--------TTHLQKRQHSENR 84

  Fly   112 ---IVGNLDYGVSNTDIKELFNDFGPIKKAAVHYDRSGRSLGTADVIFERRADALKAIKQYHGVP 173
               .|.||.|.|...|:..||.:|.|| :..::|||:|||.|:.||.||...||..|.|......
pombe    85 FGVRVENLHYQVLEKDVLSLFENFHPI-RVIMNYDRAGRSEGSCDVYFETSQDAEDAQKTLQSTN 148

  Fly   174 LDG--------RPMTIQLAVSDVAVLTRPVAATDVKRRVGGTAPTSFKRGGGQAGGTARRGFKRP 230
            |.|        .|.::...:||:     |.:|....|                 ...:.|||.|.
pombe   149 LKGSEIQISKKSPPSLFDRISDM-----PHSARKPSR-----------------SSRSNRGFNRS 191

  Fly   231 VGGKPAAGGQRRERKAPPTA---EELDAELDSY 260
             ..|.....:...:|:...:   |:||.|||.|
pombe   192 -SKKDDRSFRSSSKKSSNNSISHEDLDKELDEY 223

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ref1NP_651968.1 RRM <108..>187 CDD:223796 31/98 (32%)
RRM_THOC4 109..183 CDD:241124 31/93 (33%)
FoP_duplication 214..>265 CDD:290576 13/50 (26%)
SPBC106.12cNP_595161.1 RRM 1..229 CDD:223796 71/293 (24%)
RRM_Aly_REF_like 87..158 CDD:240864 28/71 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0533
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_101458
Panther 1 1.100 - - LDO PTHR19965
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
65.770

Return to query results.
Submit another query.