Sequence 1: | NP_651968.1 | Gene: | Ref1 / 44029 | FlyBaseID: | FBgn0010774 | Length: | 266 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_035698.1 | Gene: | Alyref / 21681 | MGIID: | 1341044 | Length: | 255 | Species: | Mus musculus |
Alignment Length: | 270 | Identity: | 134/270 - (49%) |
---|---|---|---|
Similarity: | 164/270 - (60%) | Gaps: | 32/270 - (11%) |
- Green bases have known domain annotations that are detailed below.
Fly 1 MVDKIEMSLDDIIKSTRSQKKPQAARGGPGGARKTG--GQQRFAGGARRGGA--NAGGSP-RKPG 60
Fly 61 SVLKGPRGGVAAGAVQKAKFPR-GDVNSAWKHDMYDGPKRGAVGGGSGPT---RLIVGNLDYGVS 121
Fly 122 NTDIKELFNDFGPIKKAAVHYDRSGRSLGTADVIFERRADALKAIKQYHGVPLDGRPMTIQLAVS 186
Fly 187 DVAVLTRPVAATDVKRRVGGTAPTSFKRGGGQAGGTARRGFKRPVGGKPAAG-GQRRERKAPPTA 250
Fly 251 EELDAELDSY 260 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Ref1 | NP_651968.1 | RRM | <108..>187 | CDD:223796 | 58/81 (72%) |
RRM_THOC4 | 109..183 | CDD:241124 | 56/76 (74%) | ||
FoP_duplication | 214..>265 | CDD:290576 | 22/48 (46%) | ||
Alyref | NP_035698.1 | Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1..83 | 38/90 (42%) | |
Sufficient for RNA-binding, interaction with NXF1-NXT1 heterodimer. /evidence=ECO:0000250 | 16..37 | 12/26 (46%) | |||
RRM_THOC4 | 106..179 | CDD:241124 | 56/72 (78%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 185..255 | 29/73 (40%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 116 | 1.000 | Domainoid score | I5923 |
eggNOG | 1 | 0.900 | - | - | E1_KOG0533 | |
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 1 | 1.000 | - | - | H38099 | |
Inparanoid | 1 | 1.050 | 202 | 1.000 | Inparanoid score | I3746 |
Isobase | 1 | 0.950 | - | 0 | Normalized mean entropy | S2025 |
OMA | 1 | 1.010 | - | - | QHG58344 | |
OrthoDB | 1 | 1.010 | - | - | D1369069at2759 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0001223 | |
OrthoInspector | 1 | 1.000 | - | - | otm42753 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_101458 | |
Panther | 1 | 1.100 | - | - | LDO | PTHR19965 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R5291 |
SonicParanoid | 1 | 1.000 | - | - | X843 | |
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 1 | 0.960 | - | - | ||
16 | 15.820 |