DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ref1 and Alyref

DIOPT Version :9

Sequence 1:NP_651968.1 Gene:Ref1 / 44029 FlyBaseID:FBgn0010774 Length:266 Species:Drosophila melanogaster
Sequence 2:NP_035698.1 Gene:Alyref / 21681 MGIID:1341044 Length:255 Species:Mus musculus


Alignment Length:270 Identity:134/270 - (49%)
Similarity:164/270 - (60%) Gaps:32/270 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MVDKIEMSLDDIIKSTRSQKKPQAARGGPGGARKTG--GQQRFAGGARRGGA--NAGGSP-RKPG 60
            |.||::||||||||..|||      |||.||.|..|  |.|...|||.:..|  |.||.| |...
Mouse     1 MADKMDMSLDDIIKLNRSQ------RGGRGGGRGRGRAGSQGGRGGAVQAAARVNRGGGPMRNRP 59

  Fly    61 SVLKGPRGGVAAGAVQKAKFPR-GDVNSAWKHDMYDGPKRGAVGGGSGPT---RLIVGNLDYGVS 121
            ::.:|..||   |..:.|.:.| ..:...|:||::|    ...|||:|..   :|:|.|||:|||
Mouse    60 AIARGAAGG---GRNRPAPYSRPKQLPDKWQHDLFD----SGFGGGAGVETGGKLLVSNLDFGVS 117

  Fly   122 NTDIKELFNDFGPIKKAAVHYDRSGRSLGTADVIFERRADALKAIKQYHGVPLDGRPMTIQLAVS 186
            :.||:|||.:||.:|||||||||||||||||||.|||:||||||:|||:|||||||||.|||..|
Mouse   118 DADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTS 182

  Fly   187 DVAVLTRPVAATDVKRRVGGTAPTSFKRGGGQAGGTARRGFKRPVGGKPAAG-GQRRERKAPPTA 250
            .:....||  |..:.|  ||.  |..:..||..||..|||.:   ||....| |..|..|...:|
Mouse   183 QIDTQRRP--AQSINR--GGM--TRNRGSGGFGGGGTRRGTR---GGSRGRGRGTGRNSKQQLSA 238

  Fly   251 EELDAELDSY 260
            |||||:||:|
Mouse   239 EELDAQLDAY 248

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ref1NP_651968.1 RRM <108..>187 CDD:223796 58/81 (72%)
RRM_THOC4 109..183 CDD:241124 56/76 (74%)
FoP_duplication 214..>265 CDD:290576 22/48 (46%)
AlyrefNP_035698.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..83 38/90 (42%)
Sufficient for RNA-binding, interaction with NXF1-NXT1 heterodimer. /evidence=ECO:0000250 16..37 12/26 (46%)
RRM_THOC4 106..179 CDD:241124 56/72 (78%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 185..255 29/73 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 116 1.000 Domainoid score I5923
eggNOG 1 0.900 - - E1_KOG0533
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H38099
Inparanoid 1 1.050 202 1.000 Inparanoid score I3746
Isobase 1 0.950 - 0 Normalized mean entropy S2025
OMA 1 1.010 - - QHG58344
OrthoDB 1 1.010 - - D1369069at2759
OrthoFinder 1 1.000 - - FOG0001223
OrthoInspector 1 1.000 - - otm42753
orthoMCL 1 0.900 - - OOG6_101458
Panther 1 1.100 - - LDO PTHR19965
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5291
SonicParanoid 1 1.000 - - X843
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1615.820

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