Protein Alignment Ref1 and Rbmx

DIOPT Version :10

• Sequence 1: NP_651968.1
• Gene: Ref1 / 44029
• FlyBaseID: FBgn0010774
• Length: 266
• Species: Drosophila melanogaster
• Sequence 2: NP_035382.1
• Gene: Rbmx / 19655
• MGIID: 1343044
• Length: 391
• Species: Mus musculus
• Alignment Length: 215
• Identity: 51/215 - (23%)
• Similarity: 78/215 - (36%)
• Gaps: 73/215 - (33%)

  Fly   108 PTRLIVGNLDYGVSNTDIKELFNDFGPIKKAAVHYDR-SGRSLGTADVIFERRADALKAIKQYHG 171
            |.:|.:|.|:...:...::.:|..:|.|.:..:..|| :.:|.|.|.|.||..|||..|.:..:|
Mouse     7 PGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNG 71

  Fly   172 VPLDGRPMTIQLAVSDVAVLTRPVAATDVKRRVGGTAPTSFKRG------GGQAGGTARRG---- 226
            ..|||:.:.::.|       |:|  :.:..||  |..|....||      ||:.|....||
Mouse    72 KSLDGKAIKVEQA-------TKP--SFESGRR--GLPPPPRSRGPPRGLRGGRGGSGGTRGPPSR 125

  Fly   227 -----------------------FKRPVGGKPAAGGQRRERKA---------------------- 246
                                   .||  |..|.:||...:|.|
Mouse   126 GGHMDDGGYSMNFTMSSSRGPLPVKR--GPPPRSGGPPPKRSAPSGPVRSSSGLGGRAPVSRGRD 188

  Fly   247 ----PPTAEELDAELDSYIN 262
                ||..|.|.:..|.|::
Mouse   189 GYGGPPRREPLPSRRDVYLS 208

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ref1	NP_651968.1	sex-lethal	31..>184	CDD:273740	23/76 (30%)
		RRM_THOC4	109..183	CDD:410081	22/74 (30%)
		FoP_duplication	202..>260	CDD:464005	24/116 (21%)
Rbmx	NP_035382.1	RRM_RBMX_like	7..86	CDD:409816	24/85 (28%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	62..391		34/160 (21%)
		dnaA	167..>306	CDD:455861	6/42 (14%)
		RBM1CTR	173..217	CDD:400429	6/36 (17%)