Protein Alignment Ref1 and pabp-2

DIOPT Version :10

• Sequence 1: NP_651968.1
• Gene: Ref1 / 44029
• FlyBaseID: FBgn0010774
• Length: 266
• Species: Drosophila melanogaster
• Sequence 2: NP_492504.1
• Gene: pabp-2 / 172768
• WormBaseID: WBGene00003904
• Length: 205
• Species: Caenorhabditis elegans
• Alignment Length: 134
• Identity: 33/134 - (24%)
• Similarity: 54/134 - (40%)
• Gaps: 21/134 - (15%)

  Fly   113 VGNLDYGVSNTDIKELFNDFGPIKKAAVHYDR-SGRSLGTADVIFERRADALKAIKQYHGVPLDG 176
            |||:|||.:..:|::.|:..|.:.:..:..|| ||...|.|.|.|..:.....|
 Worm    82 VGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFAYVEFTEKEGMQNA----------- 135

  Fly   177 RPMTIQLAVSDVAVLTRPVAATDVKRRVGGTAPTS---FKRGGGQAGGTARRGFKRPVGGKPAAG 238
                  ||::|..:..|.:.....:....|.:.|:   |:..||:..|.....:....|.:|...
 Worm   136 ------LAMTDSLLRGRQIKVDPKRTNKPGMSTTNRPPFRGRGGRGRGNVIVKYVYAGGFRPRGR 194

  Fly   239 GQRR 242
            |.||
 Worm   195 GARR 198

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ref1	NP_651968.1	sex-lethal	31..>184	CDD:273740	18/71 (25%)
		RRM_THOC4	109..183	CDD:410081	18/70 (26%)
		FoP_duplication	202..>260	CDD:464005	11/44 (25%)
pabp-2	NP_492504.1	RRM_SF	79..154	CDD:473069	22/88 (25%)