Protein Alignment Ref1 and Gm4340

DIOPT Version :9

• Sequence 1: NP_651968.1
• Gene: Ref1 / 44029
• FlyBaseID: FBgn0010774
• Length: 266
• Species: Drosophila melanogaster
• Sequence 2: NP_001171006.1
• Gene: Gm4340 / 100043292
• MGIID: 3782524
• Length: 268
• Species: Mus musculus
• Alignment Length: 300
• Identity: 106/300 - (35%)
• Similarity: 141/300 - (47%)
• Gaps: 82/300 - (27%)

  Fly     1 MVDKIEMSLDDIIKSTRSQKKPQAARGGPGGARKTG-GQQRFAGGARRGGANAGGSPRKPGSVLK 64
            |.||::|||:||||.|:.|   |.....|......| |.:|:......||.|.
Mouse     4 MADKMDMSLEDIIKLTKIQ---QRRHDRPDSRVNRGTGSKRYRPAFTHGGRNR------------ 53

  Fly    65 GPRGGVAAGAVQKAKFPRGDVNSAWKHDMYDGPKRGA----VGGGSGPTRLIVGNLDYGVSNTDI 125
                  .|...:..:.|     ..|:||::.|..||.    .||     :|.:.||.:|||:.||
Mouse    54 ------LAPYCRPKQLP-----DKWQHDLFIGGFRGQNHVDTGG-----KLFLSNLHFGVSDADI 102

  Fly   126 KELFNDFGPIKKAAVHYDRSGRSLGTADVIFERRADALKAIKQYHGVPLDGRPMTIQLAVSDVAV 190
            :.||.:||.:||:||||||.|||||||.|.|||:||||||:::|:|.|||||||.||||.|.:..
Mouse   103 QLLFAEFGTLKKSAVHYDRCGRSLGTAQVHFERKADALKAMREYNGAPLDGRPMNIQLATSQIDR 167

  Fly   191 LTRPVAATDVKRRVGGTAPTSFKRGGG--QAGGTARRGFKRPVGGKPAAG--------------- 238
            ..||..:   |.|.|.|.    ..|.|  ..|||.    |..:||....|
Mouse   168 QGRPAQS---KNRGGMTR----NPGSGVLSGGGTK----KWTLGGSQGRGRGTIRNSKLQQQQQQ 221

  Fly   239 ------------------GQRRERKAPPTAEELDAELDSY 260
                              .|:::::...:||||||:||:|
Mouse   222 QKQKQQQQQQKQQQKQQQKQQQKQQQQLSAEELDAQLDAY 261

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ref1	NP_651968.1	RRM	<108..>187	CDD:223796	50/78 (64%)
		RRM_THOC4	109..183	CDD:241124	47/73 (64%)
		FoP_duplication	214..>265	CDD:290576	18/81 (22%)
Gm4340	NP_001171006.1	FYTT	6..>59	CDD:284488	20/73 (27%)
		RRM	<79..>186	CDD:223796	59/118 (50%)
		RRM_THOC4	86..160	CDD:241124	48/78 (62%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	1	1.000	116	1.000	Domainoid score	I5923
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	1	1.000	-	-
Homologene	0	0.000	Not matched by this tool.
Inparanoid	1	1.050	202	1.000	Inparanoid score	I3746
Isobase	0	0.000	Not matched by this tool.
OMA	1	1.010	-	-		QHG58344
OrthoDB	1	1.010	-	-		D1369069at2759
OrthoFinder	1	1.000	-	-		FOG0001223
OrthoInspector	1	1.000	-	-		otm42753
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR19965
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	1	1.000	-	-		X843
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	10	10.080