DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GOLGA6L22 and epg-2

DIOPT Version :9

Sequence 1:NP_001382774.1 Gene:GOLGA6L22 / 440243 HGNCID:50289 Length:810 Species:Homo sapiens
Sequence 2:NP_490955.1 Gene:epg-2 / 171787 WormBaseID:WBGene00021468 Length:690 Species:Caenorhabditis elegans


Alignment Length:713 Identity:143/713 - (20%)
Similarity:301/713 - (42%) Gaps:130/713 - (18%)


- Green bases have known domain annotations that are detailed below.


Human   173 NAKLQEKLQLVESEKSEIQLNVKELKRKLERAKLLLPQQQLQAEADHLGKELQSVSAKLQAQVEE 237
            :|:.||.::|.|.....:...:.|.|.:         .|.|:.|...|.||  :|.||..:.:.|
 Worm    13 SAEDQEPIELAEDSLQNLDKMLAEEKEE---------HQLLKDEVVLLRKE--NVEAKTYSTLLE 66

Human   238 NELWNRLNQQQEEKMWRQEEKIQEWEEKIQEQEEKIREQEEKIREQEEKMRRQEEMMWEKEEKMR 302
            ..|     .:.|||....:|...| |..::.....:..:..:::|.:|::|:    :|..:.|  
 Worm    67 IML-----DEAEEKASSAQETTSE-ENNLKILNRDLVAENLELKEMKEELRK----IWLSDSK-- 119

Human   303 RQEEMMWEKEEKIRELEEKMHEQEKIREQEE---KRQEEEKIREQEKRQEQEAKMWRQEEKIREQ 364
            :.:|.:....::..:|::..||.|.||:..:   ....||..:.|.:.:|.|:::...|.::.|:
 Worm   120 KFQEALTRISDENTKLQKDCHELESIRQCAQFALDNCNEELEKTQTENEEHESRIETLEREVCEK 184

Human   365 EEKIREQEKKMWRQEEKIHEQEKIREEEKRQEQEE-MWRQEE---KIREQEEIWRQKEKMHEQE- 424
            :..:    |.:..::::|..|.:::.:|......: |:.:|:   :|.:.:|.|:.|:...|.| 
 Worm   185 DIAM----KDIVERKDEISLQLELQTKEFTSALNDLMYGREDTLKQIHQMKENWKVKQNEFEVEI 245

Human   425 EKIRKQEEKVWRQEEKMHDQEEKIREQEEKVWRQEEKIR-EQEKKREQEEKMWRQEEKIREQ-EE 487
            .|::.|.:....:..::.|:...:..:...|..:....| ..::|.|..|.:....:.:|:: |:
 Worm   246 TKLKSQNDYFDSERLQLTDRIRALLNELSDVRLELGSTRLAMKEKAEVTEAVTSFNKDLRDKLED 310

Human   488 KIREQEEMWREEEKMHEQEKIWEEEKRQEQEDKMWRQEEKIREQEEK--VWRQE-----EKIREQ 545
            :|....|..:..:..|||:           |..:...||:::...:|  .:..|     |.:||.
 Worm   311 EIARLGECLQFRKDEHEQD-----------EAVIAHLEEQLKLGSDKAAAFSSEHSDTIELLRES 364

Human   546 EEKRQE--QEEKMWKQEEKI-REQEEKIREQEEKIREQ-----EEKIREQEEMMQEQEEKM---- 598
            |.:..|  .|....|::.|| :|::|.:....|.:|||     :|:..|:.:|..|.:.||    
 Worm   365 ETELMELRMENYDLKEDFKILKEEKEDVNRTCECLREQLSTTIQERDIEKGQMQSEMDAKMVAVH 429

Human   599 ---GEQEEKMQEQEKMRRQEEKIREQ------EEKIREQKEKIREQEEKIWEQEEKIREQEEMMQ 654
               .:|.:.|:....:...:|.|:.|      ::|...:...:|.:.|:.....:.:|:|..::.
 Worm   430 QQYAKQIDNMKYNHMLAINQELIKGQMALESGKKKHANEILTVRNELEQSNAAHQSLRDQCSLLL 494

Human   655 EQEEKMGE------------QEEKIWEQEEKMQEQEE-----KMRRQEEKIREQEKKIREQE--- 699
            ..|:.:..            .||.|..:..:...|:|     :..:.|..:.|..|...:|.   
 Worm   495 SSEDDLRTAHLALESKMTLVSEECIALRVSRANAQKEIGNLTEHHKLEVALLEDAKSGIQQRLHY 559

Human   700 -----EKIREQEEMMQEQEEKMGEQEEKMQEQEE------KMRRQEEKIREQEKKIREQ------ 747
                 |::::..|:.|.|.:|  |.:||..|..|      .|::|...:....:.:..|      
 Worm   560 ATIEIEQLKKINEVTQAQFKK--ETDEKNAEINEFQAAMVSMKQQYNVLGNHCRVLTSQGISDRT 622

Human   748 -----EEKIREQEEMMQEQEE-------KMWEQEEKMCEQ--EEKMQEQEEKMRRQEEKM-WE 795
                 :|.|||..|:..|.:.       ::.:..:|:.:.  .|::.|:.:.....|||. ||
 Worm   623 TIDKLQETIREHTELAIETKRIHDAEIVQLNDAHKKLVDNLGVEELDEEPKASTESEEKAEWE 685

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GOLGA6L22NP_001382774.1 None
epg-2NP_490955.1 SMC_prok_B <14..413 CDD:274008 91/436 (21%)
Smc 264..>606 CDD:224117 71/354 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

Return to query results.
Submit another query.