Protein Alignment nmd and PEX6

DIOPT Version :9

• Sequence 1: NP_001285801.1
• Gene: nmd / 44021
• FlyBaseID: FBgn0005322
• Length: 369
• Species: Drosophila melanogaster
• Sequence 2: NP_014070.1
• Gene: PEX6 / 855387
• SGDID: S000005273
• Length: 1030
• Species: Saccharomyces cerevisiae
• Alignment Length: 403
• Identity: 116/403 - (28%)
• Similarity: 197/403 - (48%)
• Gaps: 68/403 - (16%)

  Fly     1 MDNFGLGG-SDLSKGQIFQVLVRLSVASLITYYSVKWMMNQMDPTSK---NKKKAKVLAEEQLKR 61
            |||..... |..|.|     |..|.:.|::.       ..:|..|::   ..||...|.:..|
Yeast   650 MDNISFSSLSSYSAG-----LTPLDIKSIVE-------TARMTATARFYQESKKCGWLPQSIL-- 700

  Fly    62 LAEQEGFKLRGQEFSDYELMIASHLVVPADITVSWADIAGLDSVIQELRESVVLPIQHKDLFKHS 126
            :.:::..|...:..:::.:.|.:    |....|:|.||.|:|.|..|:.:::.:|::|.:||...
Yeast   701 ITQEDLSKATSKARNEFSVSIGA----PQIPNVTWDDIGGIDFVKGEILDTIDMPLKHPELFTSG 761

  Fly   127 KLWQAPKGVLLHGPPGCGKTLIAKATAKEAGMRFINLDVAILTDKWYGESQKLTSAVFSLASRIE 191
              .:...|:|.:||||.||||:|||.|....:.|.::....|.:.:.|||:.....||..|...:
Yeast   762 --MKKRSGILFYGPPGTGKTLMAKAIATNFSLNFFSVKGPELLNMYIGESEANVRRVFQKAREAK 824

  Fly   192 PCIIFIDEIDSFLRSRNMNDHEATAMMK---TQFMMLWDGLSTNANSTVIVMGATNRPQDLDKAI 253
            ||:||.|||||....|. |..::..:|.   :|.:...||:||:|:. |.|:||||||..||:|:
Yeast   825 PCVIFFDEIDSVAPKRG-NQGDSGGVMDRIVSQLLAELDGMSTDADG-VFVIGATNRPDLLDEAL 887

  Fly   254 VRRMPAQF----HIGLP-SETQRKDILKLILQSEEVSQDVDLNRLSKLTN-GFSGSDLREMCRNA 312
            :|  |.:|    ::|:| ::|::.:||:.:.:...:..||.|..|:||.. .::|:|...:|.:|
Yeast   888 LR--PGRFDKLLYLGIPDTDTKQLNILEALTRKFVLDNDVKLIELAKLCPFNYTGADFYALCSDA 950

  Fly   313 SVYRMRQL------------------ITSR---DPSATALDRNNVRITMDDLLGSHLKIKESKMH 356
            .:..|.::                  |::|   |..||..| ..|.:.|:|.|      |..:..
Yeast   951 MLNAMSRIARMVEKKVSQHNELTGENISTRRWFDKIATKED-TKVVVKMEDFL------KAQEQL 1008

  Fly   357 TSSLFLENRIELD 369
            |.|:   :|.||:
Yeast  1009 TPSV---SRAELN 1018

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
nmd	NP_001285801.1	AAA	132..266	CDD:214640	55/140 (39%)
		AAA	135..265	CDD:278434	53/136 (39%)
PEX6	NP_014070.1	SpoVK	540..1017	CDD:223540	114/400 (29%)
		RecA-like_PEX6_r2	740..899	CDD:410935	60/164 (37%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0464
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.810