DRSC/TRiP Functional Genomics Resources

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Protein Alignment nmd and SEC18

DIOPT Version :10

Sequence 1:NP_609373.1 Gene:nmd / 44021 FlyBaseID:FBgn0005322 Length:369 Species:Drosophila melanogaster
Sequence 2:NP_009636.3 Gene:SEC18 / 852372 SGDID:S000000284 Length:758 Species:Saccharomyces cerevisiae


Alignment Length:384 Identity:98/384 - (25%)
Similarity:167/384 - (43%) Gaps:91/384 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 KGQIFQVLVRLSVASLITYYSVKWMMNQMDPTSK----NKKKAKVLAEEQLKRLAEQEGF-KLRG 72
            :|..|.:.:| :|.::        .:..::|||.    .:.|..:..:.|:.....::|. .|: 
Yeast   163 QGHFFDLKIR-NVQAI--------DLGDIEPTSAVATGIETKGILTKQTQINFFKGRDGLVNLK- 217

  Fly    73 QEFSDYELMIASHLVVPADITVSWADIAGLD------------------SVIQELRESVVLPIQH 119
               |...|...|:.|:..|.......:.|||                  |||::|..|.|     
Yeast   218 ---SSNSLRPRSNAVIRPDFKFEDLGVGGLDKEFTKIFRRAFASRIFPPSVIEKLGISHV----- 274

  Fly   120 KDLFKHSKLWQAPKGVLLHGPPGCGKTLIAK-----ATAKEAGMRFINLDVAILTDKWYGESQKL 179
                         ||:||:||||.||||||:     ..|||.  :.:| ...||: |:.|.|::.
Yeast   275 -------------KGLLLYGPPGTGKTLIARKIGTMLNAKEP--KIVN-GPEILS-KYVGSSEEN 322

  Fly   180 TSAVFSLA----------SRIEPCIIFIDEIDSFLRSRNMNDHEATAM---MKTQFMMLWDGLST 231
            ...:|..|          |.:.  ||..||:||..:.|.... :.|.:   :..|.:...||:..
Yeast   323 IRNLFKDAEAEYRAKGEESSLH--IIIFDELDSVFKQRGSRG-DGTGVGDNVVNQLLAKMDGVDQ 384

  Fly   232 NANSTVIVMGATNRPQDLDKAIVR--RMPAQFHIGLPSETQRKDIL----KLILQSEEVSQDVDL 290
            ..|  ::|:|.|||...:|.|::|  |...|..|.||.|..|..|.    |.:.::..:|.||:|
Yeast   385 LNN--ILVIGMTNRKDLIDSALLRPGRFEVQVEIHLPDEKGRLQIFDIQTKKMRENNMMSDDVNL 447

  Fly   291 NRLSKLTNGFSGSDLREMCRNASVYRMRQLITSRDPSATALDRNNV---RITMDDLLGS 346
            ..|:.||..|||:::..:.::||.:.:.:.: :....||.|:..::   ::|.:|.|.:
Yeast   448 AELAALTKNFSGAEIEGLVKSASSFAINKTV-NIGKGATKLNTKDIAKLKVTREDFLNA 505

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nmdNP_609373.1 RecA-like_ATAD1 98..263 CDD:410928 57/202 (28%)
AAA_lid_3 287..323 CDD:465537 11/35 (31%)
SEC18NP_009636.3 CDC48_N 29..98 CDD:215012
CDC48_2 134..204 CDD:215011 8/49 (16%)
CDC48 <232..>629 CDD:273521 83/302 (27%)
RecA-like_NSF-SEC18_r1-like 240..416 CDD:410912 57/202 (28%)
Blue background indicates that the domain is not in the aligned region.

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