Protein Alignment nmd and CDC48

DIOPT Version :9

• Sequence 1: NP_001285801.1
• Gene: nmd / 44021
• FlyBaseID: FBgn0005322
• Length: 369
• Species: Drosophila melanogaster
• Sequence 2: NP_010157.1
• Gene: CDC48 / 851431
• SGDID: S000002284
• Length: 835
• Species: Saccharomyces cerevisiae
• Alignment Length: 314
• Identity: 98/314 - (31%)
• Similarity: 163/314 - (51%)
• Gaps: 31/314 - (9%)

  Fly    57 EQLKRLAEQEGFKLRG----QEFSDYELMIASHLVVPADITVSWA-------------------D 98
            |..:.:.:.:.|.:||    .||...::....:.||..|..:.|.                   |
Yeast   151 EAYRPVRKGDHFVVRGGMRQVEFKVVDVEPEEYAVVAQDTIIHWEGEPINREDEENNMNEVGYDD 215

  Fly    99 IAGLDSVIQELRESVVLPIQHKDLFKHSKLWQAPKGVLLHGPPGCGKTLIAKATAKEAGMRFINL 163
            |.|....:.::||.|.||::|..|||...: :.|:|||::||||.||||:|:|.|.|.|..|..:
Yeast   216 IGGCRKQMAQIREMVELPLRHPQLFKAIGI-KPPRGVLMYGPPGTGKTLMARAVANETGAFFFLI 279

  Fly   164 DVAILTDKWYGESQKLTSAVFSLASRIEPCIIFIDEIDSFLRSRNMNDHEATAMMKTQFMMLWDG 228
            :...:..|..|||:......|..|.:..|.|||||||||....|:..:.|....:.:|.:.|.||
Yeast   280 NGPEVMSKMAGESESNLRKAFEEAEKNAPAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDG 344

  Fly   229 LSTNANSTVIVMGATNRPQDLDKAIVR--RMPAQFHIGLPSETQRKDILKLILQSEEVSQDVDLN 291
            :  .|.|.|:|:.|||||..:|.|:.|  |...:..||:|..|.|.::|::..::.:::.||||.
Yeast   345 M--KARSNVVVIAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEVLRIHTKNMKLADDVDLE 407

  Fly   292 RLSKLTNGFSGSDLREMCRNASVYRMRQLITSRDPSATALDR---NNVRITMDD 342
            .|:..|:|:.|:|:..:|..|::.::|:.:...|.....:|.   :::.:|||:
Yeast   408 ALAAETHGYVGADIASLCSEAAMQQIREKMDLIDLDEDEIDAEVLDSLGVTMDN 461

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
nmd	NP_001285801.1	AAA	132..266	CDD:214640	55/135 (41%)
		AAA	135..265	CDD:278434	52/131 (40%)
CDC48	NP_010157.1	CDC48	48..785	CDD:273521	98/314 (31%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0464
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.810