Protein Alignment nmd and AFG2

DIOPT Version :9

• Sequence 1: NP_001285801.1
• Gene: nmd / 44021
• FlyBaseID: FBgn0005322
• Length: 369
• Species: Drosophila melanogaster
• Sequence 2: NP_013501.1
• Gene: AFG2 / 851113
• SGDID: S000004389
• Length: 780
• Species: Saccharomyces cerevisiae
• Alignment Length: 285
• Identity: 87/285 - (30%)
• Similarity: 149/285 - (52%)
• Gaps: 32/285 - (11%)

  Fly    94 VSWADIAGLDSVIQELRESVVLPIQHKDLFKHSKLWQAPKGVLLHGPPGCGKTLIAKATAKEAGM 158
            :|:|.:.|||..|:.|:.::.:|:....||....: ..|:|:|||||||.|||::.:..|..:..
Yeast   242 LSYAAVGGLDKEIESLKSAIEIPLHQPTLFSSFGV-SPPRGILLHGPPGTGKTMLLRVVANTSNA 305

  Fly   159 RFINLDVAILTDKWYGESQKLTSAVFSLASRIEPCIIFIDEIDSFLRSR-NMNDHEATAMMKTQF 222
            ..:.::...:..|:.||::.....:|:.|.:.:|.|||||||||...:| |.:..|..:.:....
Yeast   306 HVLTINGPSIVSKYLGETEAALRDIFNEARKYQPSIIFIDEIDSIAPNRANDDSGEVESRVVATL 370

  Fly   223 MMLWDGLSTNANSTVIVMGATNRPQDLDKAIVRRMPAQF----HIGLPSETQRKDIL-------- 275
            :.|.||:  .|...|:|:.|||||..:|.|:  |.|.:|    .||:|....|.|||
Yeast   371 LTLMDGM--GAAGKVVVIAATNRPNSVDPAL--RRPGRFDQEVEIGIPDVDARFDILTKQFSRMS 431

  Fly   276 --KLILQSEEVSQDVDLNRLSKLTNGFSGSDLREMCRNASVYRMRQLITSRDPSATALDRNNVRI 338
              :.:|.||.:..      ::..|:|:.|:||..:||. ||.:..|.....|.:   :|:.::::
Yeast   432 SDRHVLDSEAIKY------IASKTHGYVGADLTALCRE-SVMKTIQRGLGTDAN---IDKFSLKV 486

  Fly   339 TMDDLLGSHLKIKESKMHTSSLFLE 363
            |:.|:..:.:.|:.|.|.  .:|||
Yeast   487 TLKDVESAMVDIRPSAMR--EIFLE 509

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
nmd	NP_001285801.1	AAA	132..266	CDD:214640	49/138 (36%)
		AAA	135..265	CDD:278434	46/134 (34%)
AFG2	NP_013501.1	CDC48	51..773	CDD:273521	87/285 (31%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0464
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.810