Protein Alignment nmd and RIX7

DIOPT Version :10

• Sequence 1: NP_609373.1
• Gene: nmd / 44021
• FlyBaseID: FBgn0005322
• Length: 369
• Species: Drosophila melanogaster
• Sequence 2: NP_013066.1
• Gene: RIX7 / 850625
• SGDID: S000003957
• Length: 837
• Species: Saccharomyces cerevisiae
• Alignment Length: 365
• Identity: 111/365 - (30%)
• Similarity: 177/365 - (48%)
• Gaps: 67/365 - (18%)

  Fly    33 SVKWMMNQMDPTSKN------KKKAKVLAEEQLKRL-----------------AEQEGFKLRGQE 74
            |:|...|.:||...:      :...:.|:.|||..|                 |::|||
Yeast   466 SLKNTANMIDPLPLSVVQQFIRNYPEPLSGEQLSLLSIKYEDFLKALPTIQPTAKREGF------ 524

  Fly    75 FSDYELMIASHLVVPADITVSWADIAGLDSVIQELRESVVLPIQHKDLFKHSKLWQAPKGVLLHG 139
                       ..|| |:|  ||::..|..|..||..::|.||:..:|::...: .||.||||.|
Yeast   525 -----------ATVP-DVT--WANVGALQRVRLELNMAIVQPIKRPELYEKVGI-SAPGGVLLWG 574

  Fly   140 PPGCGKTLIAKATAKEAGMRFINLDVAILTDKWYGESQKLTSAVFSLASRIEPCIIFIDEIDSFL 204
            ||||||||:|||.|.|:...||::....|.:|:.|||::....||:.|....||:||.||:|:.:
Yeast   575 PPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERSIRQVFTRARASVPCVIFFDELDALV 639

  Fly   205 RSRNMNDHEATAMMKTQFMMLWDGLSTNANSTVIVMGATNRPQDLDKAIVR--RMPAQFHIGLPS 267
            ..|:.:..|:::.:....:...|||  |....:.|:||||||..:|.|::|  |:.....|.||:
Yeast   640 PRRDTSLSESSSRVVNTLLTELDGL--NDRRGIFVIGATNRPDMIDPAMLRPGRLDKSLFIELPN 702

  Fly   268 ETQRKDILKLILQSE--EVSQDVDLNRL--SKLTNGFSGSDLREMCRNASVYRMRQLITSRDPSA 328
            ..::.||:|.:.:|.  .:|.|||...:  ::..|.|||:||..:.|.:||..:::.....:...
Yeast   703 TEEKLDIIKTLTKSHGTPLSSDVDFEEIIRNEKCNNFSGADLAALVRESSVLALKRKFFQSEEIQ 767

  Fly   329 TALDRN---------------NVRITMDDLLGSHLKIKES 353
            :.||.:               .:.:||.|...:..|||.|
Yeast   768 SVLDNDLDKEFEDLSVGVSGEEIIVTMSDFRSALRKIKPS 807

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
nmd	NP_609373.1	RecA-like_ATAD1	98..263	CDD:410928	62/166 (37%)
		AAA_lid_3	287..323	CDD:465537	12/37 (32%)
RIX7	NP_013066.1	CDC48	<192..824	CDD:273521	111/365 (30%)