Protein Alignment nmd and AT1G50140

DIOPT Version :10

• Sequence 1: NP_609373.1
• Gene: nmd / 44021
• FlyBaseID: FBgn0005322
• Length: 369
• Species: Drosophila melanogaster
• Sequence 2: NP_175433.2
• Gene: AT1G50140 / 841436
• AraportID: AT1G50140
• Length: 1003
• Species: Arabidopsis thaliana
• Alignment Length: 311
• Identity: 122/311 - (39%)
• Similarity: 187/311 - (60%)
• Gaps: 13/311 - (4%)

  Fly    57 EQLKRLAEQEGFKLRGQEFSDYELMIASHLVVPADITVSWADIAGLDSVIQELRESVVLPIQHKD 121
            :.||.:|:.|           ||....|.:|.|.:|.|.:.||..|:.|.:.|.|.|:||::..:
plant   685 QNLKNIAKDE-----------YERNFVSAVVAPGEIGVKFEDIGALEDVKKALNELVILPMRRPE 738

  Fly   122 LFKHSKLWQAPKGVLLHGPPGCGKTLIAKATAKEAGMRFINLDVAILTDKWYGESQKLTSAVFSL 186
            ||....|.:..||:||.||||.||||:|||.|.|||..||::..:.||.||:|:::|||.|:||.
plant   739 LFARGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSF 803

  Fly   187 ASRIEPCIIFIDEIDSFLRSR-NMNDHEATAMMKTQFMMLWDGLSTNANSTVIVMGATNRPQDLD 250
            |:::.|.|||:|||||.|.:| ..::||||..|:.:||..||||.:..:..::::||||||.|||
plant   804 ATKLAPVIIFVDEIDSLLGARGGSSEHEATRRMRNEFMAAWDGLRSKDSQRILILGATNRPFDLD 868

  Fly   251 KAIVRRMPAQFHIGLPSETQRKDILKLILQSEEVSQDVDLNRLSKLTNGFSGSDLREMCRNASVY 315
            .|::||:|.:.::.||....|..|||:.|..|.:..|....:|:|.|.|:|||||:.:|..|:..
plant   869 DAVIRRLPRRIYVDLPDAENRLKILKIFLTPENLESDFQFEKLAKETEGYSGSDLKNLCIAAAYR 933

  Fly   316 RMRQLITSRDPSATALDRNNVR-ITMDDLLGSHLKIKESKMHTSSLFLENR 365
            .:::|:......|.|.....:| :::||.:.|..|:..|..:.::...|.|
plant   934 PVQELLQEEQKGARAEASPGLRSLSLDDFIQSKAKVSPSVAYDATTMNELR 984

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
nmd	NP_609373.1	RecA-like_ATAD1	98..263	CDD:410928	80/165 (48%)
		AAA_lid_3	287..323	CDD:465537	13/35 (37%)
AT1G50140	NP_175433.2	McrB	546..>770	CDD:441011	38/95 (40%)
		P-loop containing Nucleoside Triphosphate Hydrolases	715..881	CDD:476819	80/165 (48%)
		AAA_lid_3	905..941	CDD:465537	13/35 (37%)