Protein Alignment nmd and PEX6

DIOPT Version :10

• Sequence 1: NP_609373.1
• Gene: nmd / 44021
• FlyBaseID: FBgn0005322
• Length: 369
• Species: Drosophila melanogaster
• Sequence 2: NP_171799.2
• Gene: PEX6 / 839315
• AraportID: AT1G03000
• Length: 941
• Species: Arabidopsis thaliana
• Alignment Length: 336
• Identity: 101/336 - (30%)
• Similarity: 174/336 - (51%)
• Gaps: 41/336 - (12%)

  Fly    39 NQMDPTSKNKKKAKVLAEEQLKRLAEQEGFKLRGQEFSDYELMIASHLVVPADITVSWADIAGLD 103
            :|:|.:::     |:.|:|...:..::.  |.|.          ||.|..|....|.|.|:.||:
plant   617 SQIDNSTE-----KLTAKEDFTKALDRS--KKRN----------ASALGAPKVPNVKWDDVGGLE 664

  Fly   104 SVIQELRESVVLPIQHKDLFKHSKLWQAPKGVLLHGPPGCGKTLIAKATAKEAGMRFINLDVAIL 168
            .|...:.::|.||:.|||||  |...:...||||:||||.||||:|||.|.|..:.|:::....|
plant   665 DVKTSILDTVQLPLLHKDLF--SSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPEL 727

  Fly   169 TDKWYGESQKLTSAVFSLASRIEPCIIFIDEIDSFLRSRNMNDHEATAMMKTQFMML--WDGLST 231
            .:.:.|||:|....:|..|....||:||.||:||...:|..:......|.:....||  .||||
plant   728 INMYIGESEKNVRDIFEKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLS- 791

  Fly   232 NANSTVIVMGATNRPQDLDKAIVRRMPAQF----HIGLPSE-TQRKDILKLILQSEEVSQDVDLN 291
            :::..:.::||:|||..:|.|::|  |.:|    ::|:.:: :.|:.:||.:.:..::|:||.|.
plant   792 DSSQDLFIIGASNRPDLIDPALLR--PGRFDKLLYVGVNADASYRERVLKALTRKFKLSEDVSLY 854

  Fly   292 RLS-KLTNGFSGSDLREMCRNASVYRMRQLITSR----------DPSATALDRNNVRITMDDLLG 345
            .:: |..:.|:|:|:..:|.:|.....::.::..          ||.:..::..:....||.|..
plant   855 SVAKKCPSTFTGADMYALCADAWFQAAKRKVSKSDSGDMPTEEDDPDSVVVEYVDFIKAMDQLSP 919

  Fly   346 SHLKIKESKMH 356
            | |.|.|.|.:
plant   920 S-LSITELKKY 929

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
nmd	NP_609373.1	RecA-like_ATAD1	98..263	CDD:410928	64/170 (38%)
		AAA_lid_3	287..323	CDD:465537	9/36 (25%)
PEX6	NP_171799.2	CDC48	<380..937	CDD:273521	101/336 (30%)
		RecA-like_PEX6_r2	666..825	CDD:410935	61/163 (37%)