Protein Alignment nmd and AT4G28000

DIOPT Version :9

• Sequence 1: NP_001285801.1
• Gene: nmd / 44021
• FlyBaseID: FBgn0005322
• Length: 369
• Species: Drosophila melanogaster
• Sequence 2: NP_001328776.1
• Gene: AT4G28000 / 828913
• AraportID: AT4G28000
• Length: 832
• Species: Arabidopsis thaliana
• Alignment Length: 413
• Identity: 136/413 - (32%)
• Similarity: 214/413 - (51%)
• Gaps: 85/413 - (20%)

  Fly    25 VASLITYYSVKWMMNQMDPTSKNKK----------------KAKVLAEEQLK-------RLAEQE 66
            |.|.|:|:    :||..:|..||.:                :.:...|:.||       ::.|.|
plant   393 VVSAISYH----LMNNKEPEYKNGRLVISSNSLSHGLNILQEGQGCFEDSLKLDTNIDSKVEEGE 453

  Fly    67 GFKL----------RGQEFSDYELMIASH-------------------------LVVPA-DITVS 95
            |...          ..:..||..:..|.:                         .|:|| :|.|:
plant   454 GITKSESKSETTVPENKNESDTSIPAAKNECPLPPKAPVHEVAPDNEFEKRIRPEVIPANEIGVT 518

  Fly    96 WADIAGLDSVIQELRESVVLPIQHKDLFKHSKLWQAPKGVLLHGPPGCGKTLIAKATAKEAGMRF 160
            :|||..||...:.|:|.|:||::..|||| ..|.:..:|:||.||||.|||::|||.|.|||..|
plant   519 FADIGSLDETKESLQELVMLPLRRPDLFK-GGLLKPCRGILLFGPPGTGKTMMAKAIANEAGASF 582

  Fly   161 INLDVAILTDKWYGESQKLTSAVFSLASRIEPCIIFIDEIDSFLRSR-NMNDHEATAMMKTQFMM 224
            ||:.::.:|.||:||.:|...|:|:||:::.|.|||:||:||.|..| .:.:|||...:|.:||.
plant   583 INVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMT 647

  Fly   225 LWDGLSTNANSTVIVMGATNRPQDLDKAIVRRMPAQFHIGLPSETQRKDILKLILQSEEVSQDVD 289
            .||||.:||...::|:.|||||.|||:||:||...:..:||||...|:.||:.:| |:|.::::|
plant   648 HWDGLMSNAGDRILVLAATNRPFDLDEAIIRRFERRIMVGLPSVESREKILRTLL-SKEKTENLD 711

  Fly   290 LNRLSKLTNGFSGSDLREMCRNASVYRMRQLI------------------TSRDPSATALDRNNV 336
            ...|:::|:|:|||||:..|..|:...:|:||                  .|.:.|....:.:..
plant   712 FQELAQMTDGYSGSDLKNFCTTAAYRPVRELIKQECLKDQERRKREEAEKNSEEGSEAKEEVSEE 776

  Fly   337 R-ITMDDLLGSHLKIKESKMHTS 358
            | ||:..|....:|:.:|::..|
plant   777 RGITLRPLSMEDMKVAKSQVAAS 799

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
nmd	NP_001285801.1	AAA	132..266	CDD:214640	66/134 (49%)
		AAA	135..265	CDD:278434	64/130 (49%)
AT4G28000	NP_001328776.1	None

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0464
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1430018at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR45644
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	1	0.960	-	-
	6	5.880