Protein Alignment nmd and AT4G24710

DIOPT Version :10

• Sequence 1: NP_609373.1
• Gene: nmd / 44021
• FlyBaseID: FBgn0005322
• Length: 369
• Species: Drosophila melanogaster
• Sequence 2: NP_194202.4
• Gene: AT4G24710 / 828573
• AraportID: AT4G24710
• Length: 479
• Species: Arabidopsis thaliana
• Alignment Length: 260
• Identity: 67/260 - (25%)
• Similarity: 115/260 - (44%)
• Gaps: 35/260 - (13%)

  Fly   135 VLLHGPPGCGKTLIAKATAKEAGMR---------FINLDVAILTDKWYGESQKLTSAVF-SLASR 189
            :|||||||.|||.:.||.|::..:|         .|.::...|..||:.||.||.:.:| .:...
plant   217 ILLHGPPGTGKTSLCKALAQKLSIRCNSRYPHCQLIEVNAHSLFSKWFSESGKLVAKLFQKIQEM 281

  Fly   190 IEP----CIIFIDEIDSFLRSRN--MNDHEATAMMKTQFMML--WDGLSTNANSTVIVMGATNRP 246
            :|.    ..:.|||::|...:|.  ::..|.:..::....:|  .|.|.:..|  ||::..:|..
plant   282 VEEDGNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSAPN--VIILTTSNIT 344

  Fly   247 QDLDKAIVRRMPAQFHIGLPSETQRKDIL---------KLILQSEEVSQDVDLNRLSKLTNGFSG 302
            ..:|.|.|.|...:.::|.|:...|.:||         |.|:.|.:....:.:...|.|....|.
plant   345 TAIDVAFVDRADIKAYVGPPTLHVRYEILRSCVEELISKGIISSFQGCDGLSIPSFSSLKEKLSE 409

  Fly   303 SDLREMCRNASVYRMRQLITSRDPSATALDRNNVRITMDDLLGSHLKIKESKMHTSSLFLENRIE 367
            |::.:  .|...:..:|||.:. .....|...::| .:..|  :|..:.:...|..|.||...||
plant   410 SEVHD--TNTVPWFCKQLIEAA-KGCEGLSGRSLR-KLPFL--AHAALADPYSHDPSNFLCTMIE 468

  Fly   368  367
            plant   469  468

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
nmd	NP_609373.1	RecA-like_ATAD1	98..263	CDD:410928	41/145 (28%)
		AAA_lid_3	287..323	CDD:465537	8/35 (23%)
AT4G24710	NP_194202.4	RecA-like_Pch2-like	163..361	CDD:410916	41/145 (28%)