Protein Alignment nmd and AT4G02480

DIOPT Version :9

• Sequence 1: NP_001285801.1
• Gene: nmd / 44021
• FlyBaseID: FBgn0005322
• Length: 369
• Species: Drosophila melanogaster
• Sequence 2: NP_567238.2
• Gene: AT4G02480 / 827979
• AraportID: AT4G02480
• Length: 1265
• Species: Arabidopsis thaliana
• Alignment Length: 345
• Identity: 133/345 - (38%)
• Similarity: 204/345 - (59%)
• Gaps: 27/345 - (7%)

  Fly    28 LITYYSVKWMMNQMDPTSKNKKKAKVLAEEQLKRLAEQEGFKLRGQEFSDYELMIASHLVVPADI 92
            :|:..|:.:.:..:.......|..|    :.||.:..:          :::|..:.|.::.|:||
plant   908 VISAESISYGLQTLHDIQNENKSLK----KSLKDVVTE----------NEFEKKLLSDVIPPSDI 958

  Fly    93 TVSWADIAGLDSVIQELRESVVLPIQHKDLFKHSKLWQAPKGVLLHGPPGCGKTLIAKATAKEAG 157
            .||:.||..|::|.:.|:|.|:||:|..:||...:|.:..||:||.||||.|||::|||.|.|||
plant   959 GVSFDDIGALENVKETLKELVMLPLQRPELFDKGQLTKPTKGILLFGPPGTGKTMLAKAVATEAG 1023

  Fly   158 MRFINLDVAILTDKWYGESQKLTSAVFSLASRIEPCIIFIDEIDSFL-RSRNMNDHEATAMMKTQ 221
            ..|||:.::.:|.||:||.:|...|||||||:|.|.:||:||:||.| |..|..:|||...||.:
plant  1024 ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNE 1088

  Fly   222 FMMLWDGLSTNANSTVIVMGATNRPQDLDKAIVRRMPAQFHIGLPSETQRKDILKLILQSEEVSQ 286
            ||:.||||.|.....|:|:.|||||.|||:|::||:|.:..:.||..|.|..||.:||..||::.
plant  1089 FMVNWDGLRTKDRERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDATNRSKILSVILAKEEIAP 1153

  Fly   287 DVDLNRLSKLTNGFSGSDLREMCRNASVYRMRQLITSRDPSATALDRNN-----------VR-IT 339
            ||||..::.:|:|:|||||:.:|..|:.:.:|:::.......||....|           || :|
plant  1154 DVDLEAIANMTDGYSGSDLKNLCVTAAHFPIREILEKEKKEKTAAQAENRPTPPLYSCTDVRSLT 1218

  Fly   340 MDDLLGSHLKIKESKMHTSS 359
            |:|...:|.::..|....||
plant  1219 MNDFKAAHDQVCASVSSDSS 1238

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
nmd	NP_001285801.1	AAA	132..266	CDD:214640	71/134 (53%)
		AAA	135..265	CDD:278434	69/130 (53%)
AT4G02480	NP_567238.2	AAA	999..1134	CDD:214640	72/134 (54%)
		AAA	1001..1132	CDD:278434	69/130 (53%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0464
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1430018at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	1	1.000	-	-		mtm1165
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	1	0.960	-	-
	5	4.780