DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nmd and AT4G02480

DIOPT Version :10

Sequence 1:NP_609373.1 Gene:nmd / 44021 FlyBaseID:FBgn0005322 Length:369 Species:Drosophila melanogaster
Sequence 2:NP_567238.2 Gene:AT4G02480 / 827979 AraportID:AT4G02480 Length:1265 Species:Arabidopsis thaliana


Alignment Length:345 Identity:133/345 - (38%)
Similarity:204/345 - (59%) Gaps:27/345 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 LITYYSVKWMMNQMDPTSKNKKKAKVLAEEQLKRLAEQEGFKLRGQEFSDYELMIASHLVVPADI 92
            :|:..|:.:.:..:.......|..|    :.||.:..:          :::|..:.|.::.|:||
plant   908 VISAESISYGLQTLHDIQNENKSLK----KSLKDVVTE----------NEFEKKLLSDVIPPSDI 958

  Fly    93 TVSWADIAGLDSVIQELRESVVLPIQHKDLFKHSKLWQAPKGVLLHGPPGCGKTLIAKATAKEAG 157
            .||:.||..|::|.:.|:|.|:||:|..:||...:|.:..||:||.||||.|||::|||.|.|||
plant   959 GVSFDDIGALENVKETLKELVMLPLQRPELFDKGQLTKPTKGILLFGPPGTGKTMLAKAVATEAG 1023

  Fly   158 MRFINLDVAILTDKWYGESQKLTSAVFSLASRIEPCIIFIDEIDSFL-RSRNMNDHEATAMMKTQ 221
            ..|||:.::.:|.||:||.:|...|||||||:|.|.:||:||:||.| |..|..:|||...||.:
plant  1024 ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNE 1088

  Fly   222 FMMLWDGLSTNANSTVIVMGATNRPQDLDKAIVRRMPAQFHIGLPSETQRKDILKLILQSEEVSQ 286
            ||:.||||.|.....|:|:.|||||.|||:|::||:|.:..:.||..|.|..||.:||..||::.
plant  1089 FMVNWDGLRTKDRERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDATNRSKILSVILAKEEIAP 1153

  Fly   287 DVDLNRLSKLTNGFSGSDLREMCRNASVYRMRQLITSRDPSATALDRNN-----------VR-IT 339
            ||||..::.:|:|:|||||:.:|..|:.:.:|:::.......||....|           || :|
plant  1154 DVDLEAIANMTDGYSGSDLKNLCVTAAHFPIREILEKEKKEKTAAQAENRPTPPLYSCTDVRSLT 1218

  Fly   340 MDDLLGSHLKIKESKMHTSS 359
            |:|...:|.::..|....||
plant  1219 MNDFKAAHDQVCASVSSDSS 1238

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nmdNP_609373.1 RecA-like_ATAD1 98..263 CDD:410928 84/165 (51%)
AAA_lid_3 287..323 CDD:465537 14/35 (40%)
AT4G02480NP_567238.2 SH3_12 611..689 CDD:465661
CDC48 <895..1234 CDD:273521 131/339 (39%)
RecA-like_ATAD1 964..1130 CDD:410928 84/165 (51%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.