DRSC/TRiP Functional Genomics Resources

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Protein Alignment nmd and AT3G19740

DIOPT Version :10

Sequence 1:NP_609373.1 Gene:nmd / 44021 FlyBaseID:FBgn0005322 Length:369 Species:Drosophila melanogaster
Sequence 2:NP_188608.4 Gene:AT3G19740 / 821511 AraportID:AT3G19740 Length:993 Species:Arabidopsis thaliana


Alignment Length:347 Identity:126/347 - (36%)
Similarity:200/347 - (57%) Gaps:15/347 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 VKWMMN---QMDPTSKNKKKAKVLAEEQL----KRLAEQEGF------KLRGQEFSDYELMIASH 85
            :.|..|   ...|:...|:...:|..|.:    |||..||..      .|:.....::|....|.
plant   628 IGWARNHYLSSCPSPSIKEGRLILPRESIEISVKRLKAQEDISRKPTQNLKNIAKDEFETNFVSA 692

  Fly    86 LVVPADITVSWADIAGLDSVIQELRESVVLPIQHKDLFKHSKLWQAPKGVLLHGPPGCGKTLIAK 150
            :|.|.:|.|.:.||..|:.|.:.|.|.|:||::..:||....|.:..||:||.||||.||||:||
plant   693 VVAPGEIGVKFDDIGALEHVKKTLNELVILPMRRPELFTRGNLLRPCKGILLFGPPGTGKTLLAK 757

  Fly   151 ATAKEAGMRFINLDVAILTDKWYGESQKLTSAVFSLASRIEPCIIFIDEIDSFLRSR-NMNDHEA 214
            |.|.|||..||::..:.||.||:|:::|||.|:||.||::.|.|||:||:||.|.:| ...:|||
plant   758 ALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEA 822

  Fly   215 TAMMKTQFMMLWDGLSTNANSTVIVMGATNRPQDLDKAIVRRMPAQFHIGLPSETQRKDILKLIL 279
            |..|:.:||..||||.:..:..::::||||||.|||.|::||:|.:.::.||....|..|||:.|
plant   823 TRRMRNEFMAAWDGLRSKDSQRILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRLKILKIFL 887

  Fly   280 QSEEVSQDVDLNRLSKLTNGFSGSDLREMCRNASVYRMRQLITSRDPSATALDRNNVR-ITMDDL 343
            ..|.:....:.::|:|.|.|:|||||:.:|..|:...:::|:...:..:......::| :::||.
plant   888 TPENLETGFEFDKLAKETEGYSGSDLKNLCIAAAYRPVQELLQEENKDSVTNASPDLRPLSLDDF 952

  Fly   344 LGSHLKIKESKMHTSSLFLENR 365
            :.|..|:..|..:.::...|.|
plant   953 IQSKAKVSPSVAYDATTMNELR 974

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nmdNP_609373.1 RecA-like_ATAD1 98..263 CDD:410928 80/165 (48%)
AAA_lid_3 287..323 CDD:465537 12/35 (34%)
AT3G19740NP_188608.4 tolA <266..>377 CDD:236545
CDC48 <582..981 CDD:273521 126/347 (36%)
P-loop containing Nucleoside Triphosphate Hydrolases 705..871 CDD:476819 80/165 (48%)
Blue background indicates that the domain is not in the aligned region.

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