DRSC/TRiP Functional Genomics Resources

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Protein Alignment nmd and AT2G45500

DIOPT Version :9

Sequence 1:NP_001285801.1 Gene:nmd / 44021 FlyBaseID:FBgn0005322 Length:369 Species:Drosophila melanogaster
Sequence 2:NP_001323445.1 Gene:AT2G45500 / 819158 AraportID:AT2G45500 Length:497 Species:Arabidopsis thaliana


Alignment Length:339 Identity:116/339 - (34%)
Similarity:195/339 - (57%) Gaps:27/339 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 SVASLITYYSVKWMMNQMDP-------TSKNKKKAKVLAEEQLKRLAEQEGFKLRGQEFSDYELM 81
            ||:|..:.|  :..::|..|       |.:|.|.|          .|..:..|..|..:.|..:.
plant   158 SVSSTASRY--RKTLSQKTPVARGGVATPRNPKDA----------AASPKPVKESGNVYDDKLVE 210

  Fly    82 IASHLVVPADITVSWADIAGLDSVIQELRESVVLPIQHKDLFKHSKLWQAPKGVLLHGPPGCGKT 146
            :.:..:|....:|.|.|:|||:...|.|.|.|:||.:.:|||  :.|.:..:|:||.||||.|||
plant   211 MINTTIVDRSPSVKWDDVAGLNGAKQALLEMVILPAKRRDLF--TGLRRPARGLLLFGPPGNGKT 273

  Fly   147 LIAKATAKEAGMRFINLDVAILTDKWYGESQKLTSAVFSLASRIEPCIIFIDEIDSFLRSRNMND 211
            ::|||.|.|:...|.|:..:.||.||.||::||...:|.:|...:|.:||:|||||.:.:|:.::
plant   274 MLAKAVASESQATFFNVSASSLTSKWVGEAEKLVKTLFQVAISRQPSVIFMDEIDSIMSTRSTSE 338

  Fly   212 HEATAMMKTQFMMLWDGLSTNANSTVIVMGATNRPQDLDKAIVRRMPAQFHIGLPSETQRKDILK 276
            :||:..:|::|::.:||:::|.:..||::||||:||:||.|::||:..:.::.||....||.:.|
plant   339 NEASRRLKSEFLIQFDGVTSNPDDLVIIIGATNKPQELDDAVLRRLVKRIYVPLPDSNVRKLLFK 403

  Fly   277 LILQSEEVS-QDVDLNRLSKLTNGFSGSDLREMCRNASVYRMRQLITSRDPSATALDRNNVR-IT 339
            ..|:.:..| .|.|::::.|.|.|:|||||:.:|..|::..:|:|    ..:...:..|.|| :.
plant   404 TKLKCQPHSLSDGDIDKIVKETEGYSGSDLQALCEEAAMMPIREL----GANILTIQANKVRSLR 464

  Fly   340 MDDLLGSHLKIKES 353
            .||...|...|:.|
plant   465 YDDFRKSMAVIRPS 478

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nmdNP_001285801.1 AAA 132..266 CDD:214640 56/133 (42%)
AAA 135..265 CDD:278434 55/129 (43%)
AT2G45500NP_001323445.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0464
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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