Protein Alignment nmd and CDC48B

DIOPT Version :10

• Sequence 1: NP_609373.1
• Gene: nmd / 44021
• FlyBaseID: FBgn0005322
• Length: 369
• Species: Drosophila melanogaster
• Sequence 2: NP_178463.1
• Gene: CDC48B / 814895
• AraportID: AT2G03670
• Length: 603
• Species: Arabidopsis thaliana
• Alignment Length: 306
• Identity: 96/306 - (31%)
• Similarity: 154/306 - (50%)
• Gaps: 34/306 - (11%)

  Fly    70 LRGQEFSDYELMIASHLVVPA---DIT-----VSWADIAGLDSVIQELRESVVLPIQHKDLFKHS 126
            |..|:|.     ||..:|.|:   .||     |:|.|:.||..:.::|:::|..||:|...|  .
plant   256 LTSQDFK-----IAKSVVGPSINRGITVEIPKVTWDDVGGLKDLKKKLQQAVEWPIKHSAAF--V 313

  Fly   127 KLWQAP-KGVLLHGPPGCGKTLIAKATAKEAGMRFINLDVAILTDKWYGESQKLTSAVFSLASRI 190
            |:..:| :|:||||||||.||.:|||.|..|...|.:|..|.|...:.||.:.|....|..|...
plant   314 KMGISPMRGILLHGPPGCSKTTLAKAAANAAQASFFSLSCAELFSMYVGEGEALLRNTFQRARLA 378

  Fly   191 EPCIIFIDEIDSFLRSR----NMNDHEATAMMKTQFMMLWDGLSTNANSTVIVMGATNRPQDLDK 251
            .|.|||.||.|.....|    :.|.......:.:..:...|||.....  ::|:.|||||..:|.
plant   379 SPSIIFFDEADVVACKRGDESSSNSSTVGERLLSTLLTEMDGLEEAKG--ILVLAATNRPYAIDA 441

  Fly   252 AIVRRMPAQFHIGL----PSETQRKDILKLILQSEEVSQDVDLNRLSKLTNGFSGSDLREMCRNA 312
            |::|  |.:|.:.|    |....|.:||::..::..:..||||.::::.|:.|:|::|..:||.:
plant   442 ALMR--PGRFDLVLYVPPPDLEARFEILQVHTRNMTLGDDVDLRKIAEETDLFTGAELEGLCRES 504

  Fly   313 SVYRMRQLITSRDPSATALDRNNVRITMDDLLGSHLKIKESKMHTS 358
            ....:|:.|     :|||:...:.: |....|...|.|:|.:.::|
plant   505 GTVSLRENI-----AATAVFNRHFQ-TAKSSLKPALTIEEVETYSS 544

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
nmd	NP_609373.1	RecA-like_ATAD1	98..263	CDD:410928	59/169 (35%)
		AAA_lid_3	287..323	CDD:465537	12/35 (34%)
CDC48B	NP_178463.1	CDC48	<23..551	CDD:273521	96/306 (31%)