Protein Alignment nmd and Trip13

DIOPT Version :9

• Sequence 1: NP_001285801.1
• Gene: nmd / 44021
• FlyBaseID: FBgn0005322
• Length: 369
• Species: Drosophila melanogaster
• Sequence 2: NP_081458.1
• Gene: Trip13 / 69716
• MGIID: 1916966
• Length: 432
• Species: Mus musculus
• Alignment Length: 360
• Identity: 88/360 - (24%)
• Similarity: 145/360 - (40%)
• Gaps: 101/360 - (28%)

  Fly    36 WMMNQMDPTSKNKKKAKVLAEEQLKRLAEQEGFKLRGQEFSDYELMIASHLVVPADITVSWADIA 100
            :.:|:..|:|:|      |.||                   ...::.|||.|:||      |:..
Mouse   100 FQLNEEGPSSEN------LDEE-------------------TENIIAASHWVLPA------AEFH 133

  Fly   101 GL-DSVIQE------LRESVVLPIQHKDLFKHSKLWQAPKGVLLHGPPGCGKTLIAKATAKEAGM 158
            || ||::.:      |.:.|:..:...|....|.|....:.||||||||.|||.:.||.|::..:
Mouse   134 GLWDSLVYDVEVKSHLLDYVMTTVLFSDKNVDSNLITWNRVVLLHGPPGTGKTSLCKALAQKLTI 198

  Fly   159 R---------FINLDVAILTDKWYGESQKLTSAVFSLASRIEPCI--------IFIDEIDSFLRS 206
            |         .|.::...|..||:.||.||.:.:|   .:|:..|        :.|||::|...:
Mouse   199 RLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKMF---QKIQDLIDDKEALVFVLIDEVESLTAA 260

  Fly   207 RN-----MNDHEATAMMKTQFMMLWDGLSTNANSTVIVMGATNRPQDLDKAIVRRMPAQFHIGLP 266
            ||     ....:|..::......: |.:..::|  |:::..:|..:.:|.|.|.|...:.:||.|
Mouse   261 RNACRAGAEPSDAIRVVNAVLTQI-DQIKRHSN--VVILTTSNITEKIDVAFVDRADIKQYIGPP 322

  Fly   267 SETQRKDILKLILQSEEVSQDVDLNRLSKLTNGFSGSDLREMCRNASVYRMRQLITSRDPSATAL 331
            |...   |.|:.|                       |.|.|:.:...:|..:||:|.|:......
Mouse   323 SAAA---IFKIYL-----------------------SCLEELMKCQIIYPRQQLLTLRELEMIGF 361

  Fly   332 DRNNVRITMDDLLGSHLKIKESKMHTSSLFLENRI 366
            ..|||         |.|.:..|::...|..|..|:
Mouse   362 IENNV---------SKLSLLLSEISRKSEGLSGRV 387

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
nmd	NP_001285801.1	AAA	132..266	CDD:214640	43/155 (28%)
		AAA	135..265	CDD:278434	42/151 (28%)
Trip13	NP_081458.1	AAA	172..322	CDD:214640	43/155 (28%)
		AAA	175..320	CDD:278434	41/150 (27%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0464
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.810