Protein Alignment nmd and Fignl1

DIOPT Version :10

• Sequence 1: NP_609373.1
• Gene: nmd / 44021
• FlyBaseID: FBgn0005322
• Length: 369
• Species: Drosophila melanogaster
• Sequence 2: NP_001412580.1
• Gene: Fignl1 / 60530
• MGIID: 1890648
• Length: 692
• Species: Mus musculus
• Alignment Length: 293
• Identity: 103/293 - (35%)
• Similarity: 168/293 - (57%)
• Gaps: 26/293 - (8%)

  Fly    39 NQMDPTSKNKKKAKV----------LAEEQLKRLAEQEGFKLRGQEFSDYELMIASHLVVPADIT 93
            |:.|.:.::.||.|.          |.::.||.: |....:|...|..|:            ...
Mouse   364 NKQDGSEQHAKKHKSSRAGSAEPAHLTDDCLKNV-EPRMVELIMNEIMDH------------GPP 415

  Fly    94 VSWADIAGLDSVIQELRESVVLPIQHKDLFKHSKLWQAPKGVLLHGPPGCGKTLIAKATAKEAGM 158
            |.|.||||::.....::|.||.|:...|:|  :.|...|||:||.||||.|||||.|..|.::|.
Mouse   416 VHWDDIAGVEFAKATIKEIVVWPMMRPDIF--TGLRGPPKGILLFGPPGTGKTLIGKCIASQSGA 478

  Fly   159 RFINLDVAILTDKWYGESQKLTSAVFSLASRIEPCIIFIDEIDSFLRSRNMNDHEATAMMKTQFM 223
            .|.::..:.||.||.||.:|:..|:|::|...:|.:||||||||.|..|...:||::..:||:|:
Mouse   479 TFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFL 543

  Fly   224 MLWDGLSTNANSTVIVMGATNRPQDLDKAIVRRMPAQFHIGLPSETQRKDILKLILQSEEVS-QD 287
            :..||.:|::...::|:|||||||::|:|..||:..:.:|.||..:.||.|:..::..|:.. .|
Mouse   544 VQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVGNLMSKEQCCLSD 608

  Fly   288 VDLNRLSKLTNGFSGSDLREMCRNASVYRMRQL 320
            .:.:.:.:.::||||:|:.::||.||:..:|.|
Mouse   609 EETDLVVQQSDGFSGADMTQLCREASLGPIRSL 641

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
nmd	NP_609373.1	RecA-like_ATAD1	98..263	CDD:410928	70/164 (43%)
		AAA_lid_3	287..323	CDD:465537	12/34 (35%)
Fignl1	NP_001412580.1	RecA-like_Figl-1	398..583	CDD:410933	76/198 (38%)
		AAA_lid_3	608..>639	CDD:465537	10/30 (33%)
		Vps4_C	<649..689	CDD:462762