DRSC/TRiP Functional Genomics Resources

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Protein Alignment nmd and fignl2

DIOPT Version :10

Sequence 1:NP_609373.1 Gene:nmd / 44021 FlyBaseID:FBgn0005322 Length:369 Species:Drosophila melanogaster
Sequence 2:NP_001201837.1 Gene:fignl2 / 561837 ZFINID:ZDB-GENE-090313-189 Length:684 Species:Danio rerio


Alignment Length:317 Identity:75/317 - (23%)
Similarity:146/317 - (46%) Gaps:38/317 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    63 AEQEGFKLRGQEFSD-------YELMIASHLVVPADITVSWADIAGLDSVIQELRESVVLPIQHK 120
            |||...:.|.|:.||       ..|.:.|..:......:.|.::||...:...|.|.::.|:...
Zfish   387 AEQGFSQNRSQKRSDPMKSIEPRMLELVSRELQDCSPAMLWTELAGNCHIKAALEEDLLWPVLRP 451

  Fly   121 DLFKHSKLWQAPKGVLLHGPPGCGKTLIAKATAKEAGMRFINLDVAILTDKWYGESQKLTSAVFS 185
            :...|     .||.:||.||.|.|||.:|::.:.:.|..|..|..|.|..|..||:::|...:||
Zfish   452 NPAIH-----PPKTILLFGPQGGGKTTLARSLSSQIGASFYRLSCATLASKLKGEAEQLLLTLFS 511

  Fly   186 LASRIEPCIIFIDEIDSFLRSRNMNDHEATAMMKTQFMMLWDGLSTNANSTVIVMGATNRPQDLD 250
            :|:..:|.::.:.|:::.       :.|.   ::.|.....:.:..|.::..:|:..|.||..:.
Zfish   512 VATARQPAMVLLSEVEAI-------EEEG---LRQQLQAQLEKIQHNQSNQFLVVCTTRRPDLIK 566

  Fly   251 KAIVRRMPAQFHIGLPSETQRKDILKLILQSEEVS-QDVDLNRLSKLTNGFSGSDLREMCRNASV 314
            .:::|....::|||||....|:.:|...|..:..| .:.:|:.:.:.:.|||..:|.::|     
Zfish   567 DSLLRCFSKRYHIGLPDGNTRRHVLLQALAPQGCSLSERELSAVLQRSEGFSVWELLQLC----- 626

  Fly   315 YRMRQLITSRDPSAT----ALDRNNVRITMDDLLGSHLKIKESKMHTSSLFLENRIE 367
               :|.:.|...||:    :|..:....|:.|...:..|::.   |::...|:..:|
Zfish   627 ---QQALASASASASVPLHSLPASLSSPTLQDFENAFCKVRP---HSTPKELDTCME 677

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nmdNP_609373.1 RecA-like_ATAD1 98..263 CDD:410928 39/164 (24%)
AAA_lid_3 287..323 CDD:465537 7/35 (20%)
fignl2NP_001201837.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 27..48
PHA03247 <86..287 CDD:223021
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 99..179
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 292..403 7/15 (47%)
P-loop containing Nucleoside Triphosphate Hydrolases 429..579 CDD:476819 39/164 (24%)
Blue background indicates that the domain is not in the aligned region.

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