Protein Alignment nmd and iqca1

DIOPT Version :9

• Sequence 1: NP_001285801.1
• Gene: nmd / 44021
• FlyBaseID: FBgn0005322
• Length: 369
• Species: Drosophila melanogaster
• Sequence 2: XP_009300551.1
• Gene: iqca1 / 553364
• ZFINID: ZDB-GENE-050208-768
• Length: 845
• Species: Danio rerio
• Alignment Length: 301
• Identity: 81/301 - (26%)
• Similarity: 142/301 - (47%)
• Gaps: 30/301 - (9%)

  Fly    46 KNKKKAKVL-AEEQLKRLAEQ---EGFKLR--GQEFSDYELMIASHLVVPADITVSWADIAGLDS 104
            |.|||.|.| |:..::.|.|:   ||..:|  ..:.|||   |..:..:  ..|:..|||..:.|
Zfish   486 KKKKKEKDLTADRTIESLYEELVLEGIIIRPMNVKLSDY---IGEYSYL--GTTLRQADIEPMPS 545

  Fly   105 VIQELRESV----VLPIQHKDLFKHSKLWQAPKGVLLHGPPGCGKTLIAKATAKEAGMRFINLDV 165
             :.::|:.:    :||:..:.:.:...|.:|   :||.||.|.||.::..|...|.|....||..
Zfish   546 -LSDVRQLIALYGILPLGSQCVHERGPLIRA---LLLTGPQGVGKKMLVHALCTETGANLFNLSP 606

  Fly   166 AILTDKWYGES--QKLTSAVFSLASRIEPCIIFIDEID-SFLRS--RNMNDHEATAMMKTQFMML 225
            :.|..|:.|:|  |.|...||.:|.:::|.:|:|.:.: :|.:.  :...:.|...:.||...:|
Zfish   607 STLAGKYPGKSGLQLLLHMVFKVARQLQPSVIWIGDAEKTFYKKVPKLEKEMEPKRLKKTLPKIL 671

  Fly   226 WDGLSTNANSTVIVMGATNRPQDLD-KAIVRRMPAQFHIGLPSETQRKDILKLILQSEEVSQD-- 287
               .|..|...|:|:|.:.||.|.| |...:.......|..|....|..:.|.:||:.....|
Zfish   672 ---KSIKAEDRVLVVGTSRRPFDADIKPFCKVYKKIILIPRPDYASRFTLWKELLQAHGALLDPK 733

  Fly   288 VDLNRLSKLTNGFSGSDLREMCRNASVYRMRQLITSRDPSA 328
            :||:.|:|:|:|::...:.:..:...:....:|...|..:|
Zfish   734 LDLSSLAKVTDGYTQGHILQAIQTILIPHRLELQAKRPLTA 774

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
nmd	NP_001285801.1	AAA	132..266	CDD:214640	40/139 (29%)
		AAA	135..265	CDD:278434	40/135 (30%)
iqca1	XP_009300551.1	SpoVK	<576..748	CDD:223540	52/174 (30%)
		AAA	576..691	CDD:278434	36/117 (31%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0464
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	2	1.810