Protein Alignment nmd and AT5G52882

DIOPT Version :9

• Sequence 1: NP_001285801.1
• Gene: nmd / 44021
• FlyBaseID: FBgn0005322
• Length: 369
• Species: Drosophila melanogaster
• Sequence 2: NP_001078747.1
• Gene: AT5G52882 / 5008305
• AraportID: AT5G52882
• Length: 829
• Species: Arabidopsis thaliana
• Alignment Length: 286
• Identity: 113/286 - (39%)
• Similarity: 176/286 - (61%)
• Gaps: 29/286 - (10%)

  Fly    43 PTSKN-----KKKAKVLAEEQLKRLAEQEGFKLRGQEFSDYELMIASHLVVPA-DITVSWADIAG 101
            |::||     .|..:|:.:.:.::....|                    |:|| :|.|::|||..
plant   477 PSNKNDNPLPPKAPEVVPDNEFEKRIRPE--------------------VIPANEIGVTFADIGS 521

  Fly   102 LDSVIQELRESVVLPIQHKDLFKHSKLWQAPKGVLLHGPPGCGKTLIAKATAKEAGMRFINLDVA 166
            ||.....|:|.|:||::..|||: ..|.:..:|:||.||||.|||::|||.|.|||..|||:.::
plant   522 LDETKDSLQELVMLPLRRPDLFQ-GGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMS 585

  Fly   167 ILTDKWYGESQKLTSAVFSLASRIEPCIIFIDEIDSFLRSR-NMNDHEATAMMKTQFMMLWDGLS 230
            .:|.||:||.:|...|:|:||:::.|.|||:||:||.|..| .:.:|||...:|.:||..||||.
plant   586 TITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLM 650

  Fly   231 TNANSTVIVMGATNRPQDLDKAIVRRMPAQFHIGLPSETQRKDILKLILQSEEVSQDVDLNRLSK 295
            |.....::|:.|||||.|||:||:||...:..:||||...|:.||:.:| |:|.::::|.:.|.:
plant   651 TKPGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSIESREKILRTLL-SKEKTENLDFHELGQ 714

  Fly   296 LTNGFSGSDLREMCRNASVYRMRQLI 321
            :|.|:|||||:.:|..|:...:|:||
plant   715 ITEGYSGSDLKNLCITAAYRPVRELI 740

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
nmd	NP_001285801.1	AAA	132..266	CDD:214640	65/134 (49%)
		AAA	135..265	CDD:278434	63/130 (48%)
AT5G52882	NP_001078747.1	P-loop_NTPase	515..>575	CDD:304359	28/60 (47%)
		AAA	552..686	CDD:214640	65/133 (49%)
		AAA	554..685	CDD:278434	63/130 (48%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0464
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1430018at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	LDO	PTHR45644
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	1	0.960	-	-
	5	4.880