Protein Alignment nmd and AT5G52882

DIOPT Version :10

• Sequence 1: NP_609373.1
• Gene: nmd / 44021
• FlyBaseID: FBgn0005322
• Length: 369
• Species: Drosophila melanogaster
• Sequence 2: NP_001078747.1
• Gene: AT5G52882 / 5008305
• AraportID: AT5G52882
• Length: 829
• Species: Arabidopsis thaliana
• Alignment Length: 286
• Identity: 113/286 - (39%)
• Similarity: 176/286 - (61%)
• Gaps: 29/286 - (10%)

  Fly    43 PTSKN-----KKKAKVLAEEQLKRLAEQEGFKLRGQEFSDYELMIASHLVVPA-DITVSWADIAG 101
            |::||     .|..:|:.:.:.::....|                    |:|| :|.|::|||..
plant   477 PSNKNDNPLPPKAPEVVPDNEFEKRIRPE--------------------VIPANEIGVTFADIGS 521

  Fly   102 LDSVIQELRESVVLPIQHKDLFKHSKLWQAPKGVLLHGPPGCGKTLIAKATAKEAGMRFINLDVA 166
            ||.....|:|.|:||::..|||: ..|.:..:|:||.||||.|||::|||.|.|||..|||:.::
plant   522 LDETKDSLQELVMLPLRRPDLFQ-GGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMS 585

  Fly   167 ILTDKWYGESQKLTSAVFSLASRIEPCIIFIDEIDSFLRSR-NMNDHEATAMMKTQFMMLWDGLS 230
            .:|.||:||.:|...|:|:||:::.|.|||:||:||.|..| .:.:|||...:|.:||..||||.
plant   586 TITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLM 650

  Fly   231 TNANSTVIVMGATNRPQDLDKAIVRRMPAQFHIGLPSETQRKDILKLILQSEEVSQDVDLNRLSK 295
            |.....::|:.|||||.|||:||:||...:..:||||...|:.||:.:| |:|.::::|.:.|.:
plant   651 TKPGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSIESREKILRTLL-SKEKTENLDFHELGQ 714

  Fly   296 LTNGFSGSDLREMCRNASVYRMRQLI 321
            :|.|:|||||:.:|..|:...:|:||
plant   715 ITEGYSGSDLKNLCITAAYRPVRELI 740

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
nmd	NP_609373.1	RecA-like_ATAD1	98..263	CDD:410928	77/165 (47%)
		AAA_lid_3	287..323	CDD:465537	14/35 (40%)
AT5G52882	NP_001078747.1	P-loop containing Nucleoside Triphosphate Hydrolases	518..683	CDD:476819	77/165 (47%)
		AAA_lid_3	706..749	CDD:465537	14/35 (40%)