DRSC/TRiP Functional Genomics Resources

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Protein Alignment nmd and Pex1

DIOPT Version :10

Sequence 1:NP_609373.1 Gene:nmd / 44021 FlyBaseID:FBgn0005322 Length:369 Species:Drosophila melanogaster
Sequence 2:NP_001102690.1 Gene:Pex1 / 500006 RGDID:1559939 Length:1283 Species:Rattus norvegicus


Alignment Length:413 Identity:104/413 - (25%)
Similarity:177/413 - (42%) Gaps:95/413 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 GSDLSK-----------------GQIFQVLVRLSVASLITYYSVKWMMNQMDPTSKNKKKAKVLA 55
            |.|:||                 .:.|.|||..::.|.::        .|.:||           
  Rat   758 GCDISKSPDLDLKCIAKETEAFVARDFTVLVDRAIHSSLS--------RQQNPT----------- 803

  Fly    56 EEQLKRLAEQEGFKLRGQEFSDYELMIASHLVVPADI---------TVSWADIAGLDSVIQELRE 111
                     :||..|...:|..     |....:||.:         .:.|..|.||..|.|.|.:
  Rat   804 ---------REGLTLTTADFQK-----ALRGFLPASLRNVNLHKPRDLGWDKIGGLHEVRQILMD 854

  Fly   112 SVVLPIQHKDLFKHSKLWQAPKGVLLHGPPGCGKTLIAKATAKEAGMRFINLDVAILTDKWYGES 176
            ::.||.::.:||.:..:.|. .|:||:||||.||||:|...|:|:||.||::....|..|:.|.|
  Rat   855 TIQLPAKYPELFANLPIRQR-TGILLYGPPGTGKTLLAGVVARESGMNFISIQGPELLSKYIGAS 918

  Fly   177 QKLTSAVFSLASRIEPCIIFIDEIDSFLRSRNMNDHEATAMMKTQFMMLWDGLSTNANSTVIVMG 241
            ::....||..|...:|||:|.||.:|....|..::...|..:..|.:...||:  .....|.|:.
  Rat   919 EQAVRDVFIRAQAAKPCILFFDEFESIAPRRGHDNTGVTDRVVNQLLTQLDGV--EGLQGVYVLA 981

  Fly   242 ATNRPQDLDKAIVR--RMPAQFHIGLPSETQRKDILKLILQSEEVSQDVDLNRLSKLTNGFSGSD 304
            ||:||..:|.|::|  |:....:...|.:..|.:||.::.:|..::.||||..::.:|..|:|:|
  Rat   982 ATSRPDLIDPALLRPGRLDKCVYCPPPDQVSRLEILTVLSKSLPLADDVDLQHVASVTESFTGAD 1046

  Fly   305 LREMCRNASVYRMRQLI---------------------------TSRDPSA----TALDRNNVRI 338
            |:.:..||.:..::..:                           :..|.||    ..||::.|.:
  Rat  1047 LKALLYNAQLEALQGRLLPGGLHDGGSSSDSDLSLSSMVFLNHSSGSDDSAGDGECGLDQSLVSL 1111

  Fly   339 TMDDLLGSHLKIKESKMHTSSLF 361
            .|.::|....|....:::..|.:
  Rat  1112 EMSEILPDESKFNMYRLYFGSSY 1134

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nmdNP_609373.1 RecA-like_ATAD1 98..263 CDD:410928 58/166 (35%)
AAA_lid_3 287..323 CDD:465537 11/62 (18%)
Pex1NP_001102690.1 PEX-2N 17..98 CDD:462730
PEX-1N 104..179 CDD:462729
NACHT 418..>750 CDD:444362
CDC48 <595..1060 CDD:273521 94/337 (28%)
Blue background indicates that the domain is not in the aligned region.

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