DRSC/TRiP Functional Genomics Resources

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Protein Alignment nmd and Iqca1l

DIOPT Version :10

Sequence 1:NP_609373.1 Gene:nmd / 44021 FlyBaseID:FBgn0005322 Length:369 Species:Drosophila melanogaster
Sequence 2:NP_001019488.2 Gene:Iqca1l / 499971 RGDID:1564789 Length:822 Species:Rattus norvegicus


Alignment Length:372 Identity:72/372 - (19%)
Similarity:145/372 - (38%) Gaps:88/372 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 TSKNKKKAKVLAEEQLKRLAEQEGFKLRGQEFSDYELMIASHLVVPADITVSWADIAG----LDS 104
            :.|.||:..:..:..:..|.|              ||::..  ::...:.|:..|..|    |.|
  Rat   474 SGKKKKEKDLTPDRSVDSLFE--------------ELVVIG--LIKKSLLVTLNDYIGDCLYLGS 522

  Fly   105 VIQ-----------ELRESV----VLPIQHKDLFKHSKLWQAP--KGVLLHGPPGCGKTLIAKAT 152
            .:.           ::|:::    ||.:...|:  |:   .||  :.:||.||.|.||.::.:|.
  Rat   523 TLTLANKIPMPSLFDIRQNIALYGVLRLGSHDI--HT---MAPLVRSILLVGPSGMGKKMLVQAV 582

  Fly   153 AKEAGMRFINLDVAILTDKWYGE--SQKLTSAVFSLASRIEPCIIFIDEID-SFLR-----SRNM 209
            ..|.|....:|....:..|:.|:  ||.|...||.:|...:|.:|:|...: :|.:     .|.|
  Rat   583 CTETGANLFDLSPGNVMGKYPGKNGSQLLMHIVFKVARVFQPSVIWIGNTEKTFYKKIPKEERRM 647

  Fly   210 NDHEATAMMKTQFMMLWDGLSTNANSTVIVMGATNRPQDLD-KAIVRRMPAQFHIGLPSETQRKD 273
            :.......:......|..|      ..|:::|.|.|||..: |.:.|.......|..|....|..
  Rat   648 DPKRIKKDLMRATRQLGPG------DRVMLIGTTERPQLAEMKGLCRFYERILFIPRPDYASRYV 706

  Fly   274 ILKLILQSEEV----SQDVDLNRLSKLTNGFSGSDLREMCRNASVYRMRQLITSR---------- 324
            :.|.:::::.:    :|.:|::.|:::::|::...:.:..::....|....:|.:          
  Rat   707 LWKRMIENQGIGVQQTQSLDISALARVSDGYTPGHILQSIQSVLTERRLLQLTKKPLVASEFVVH 771

  Fly   325 ----DP-------------SATALDRNNVRITMDDLLGSHLKIKESK 354
                ||             ..|.|.:.|::.|.|.......::.:.|
  Rat   772 LAKLDPVYREEEESLKEWFYKTPLGKKNIKFTKDQQEAEEARLAKEK 818

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nmdNP_609373.1 RecA-like_ATAD1 98..263 CDD:410928 46/194 (24%)
AAA_lid_3 287..323 CDD:465537 4/35 (11%)
Iqca1lNP_001019488.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 338..378
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 457..484 3/9 (33%)
P-loop containing Nucleoside Triphosphate Hydrolases 537..696 CDD:476819 42/169 (25%)
Blue background indicates that the domain is not in the aligned region.

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