DRSC/TRiP Functional Genomics Resources

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Protein Alignment nmd and katnal1

DIOPT Version :10

Sequence 1:NP_609373.1 Gene:nmd / 44021 FlyBaseID:FBgn0005322 Length:369 Species:Drosophila melanogaster
Sequence 2:NP_001007432.1 Gene:katnal1 / 492790 ZFINID:ZDB-GENE-041114-141 Length:488 Species:Danio rerio


Alignment Length:338 Identity:122/338 - (36%)
Similarity:192/338 - (56%) Gaps:26/338 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 PTSKNKK--KAKVLAEEQLKRLAEQEGFKLRGQEFS----DYELMIA-SHLVVPADITVSWADIA 100
            |.:::.:  |||   ||:.||.|::....:..::|.    |.:|:.| ...:|..:..:.|.|||
Zfish   148 PNTRDGRGNKAK---EEKSKRNAQEGAADVEQKKFDGTGYDSDLVDALERDIVSRNPNIHWDDIA 209

  Fly   101 GLDSVIQELRESVVLPIQHKDLFKH-SKLWQAPKGVLLHGPPGCGKTLIAKATAKEAGMRFINLD 164
            .|:...:.|||:||||:...|.||. .:.|   ||||:.||||.|||::|||.|.|.|..|.|:.
Zfish   210 DLEDAKKLLREAVVLPMWMPDFFKGIRRPW---KGVLMVGPPGTGKTMLAKAVATECGTTFFNVS 271

  Fly   165 VAILTDKWYGESQKLTSAVFSLASRIEPCIIFIDEIDSFLRSRNMND-HEATAMMKTQFMMLWDG 228
            .:.||.|:.|||:||...:|.:|....|..||||||||....|..:| |||:..:|::.::..||
Zfish   272 SSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICGRRGTSDEHEASRRVKSELLVQMDG 336

  Fly   229 L-----STNANSTVIVMGATNRPQDLDKAIVRRMPAQFHIGLPSETQRKDILKLILQSEEVSQDV 288
            :     |.:.:..|:|:.|||.|.|:|:|:.||:..:.:|.||:...|.::||:.|:..:|:.||
Zfish   337 VGGAQESEDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKINLREVDVASDV 401

  Fly   289 DLNRLSKLTNGFSGSDLREMCRNASVYRMRQLITSRDPS---ATALDRNNVRITMDDLLGSHLKI 350
            ||...::...|:||:|:..:||:||:..||:.|....|.   |.:.|...:.:||:|.   .|.:
Zfish   402 DLTVFAEKIEGYSGADITNVCRDASMMAMRRRIQGLSPEEIRALSKDELQMPVTMEDF---ELAL 463

  Fly   351 KESKMHTSSLFLE 363
            |:.....|:..||
Zfish   464 KKISKSVSAADLE 476

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nmdNP_609373.1 RecA-like_ATAD1 98..263 CDD:410928 73/171 (43%)
AAA_lid_3 287..323 CDD:465537 15/35 (43%)
katnal1NP_001007432.1 Kp60-NTD 5..72 CDD:439297
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 84..184 10/38 (26%)
RecA-like_KTNA1 207..376 CDD:410930 73/171 (43%)
AAA_lid_3 400..444 CDD:465537 16/43 (37%)
Vps4_C <448..486 CDD:462762 9/32 (28%)
Blue background indicates that the domain is not in the aligned region.

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