Protein Alignment nmd and pch2

DIOPT Version :9

• Sequence 1: NP_001285801.1
• Gene: nmd / 44021
• FlyBaseID: FBgn0005322
• Length: 369
• Species: Drosophila melanogaster
• Sequence 2: NP_001287235.1
• Gene: pch2 / 41013
• FlyBaseID: FBgn0051453
• Length: 421
• Species: Drosophila melanogaster
• Alignment Length: 339
• Identity: 86/339 - (25%)
• Similarity: 161/339 - (47%)
• Gaps: 62/339 - (18%)

  Fly    72 GQEFSD--YELMIASHLVVPADITVS-WADI---AGLDSVIQELRESVVLPIQHK---DLFKHSK 127
            |:|.||  ..::.|||.::||...|. |.::   .||...:.:...|.::..:|:   ::...::
  Fly   103 GEEGSDGIDSIVAASHALLPAAQFVGLWENLIYETGLKEKLLKFALSALMFSEHRVDTNVIACNR 167

  Fly   128 LWQAPKGVLLHGPPGCGKTLIAKATAKEAGMR---------FINLDVAILTDKWYGESQKLTSAV 183
            |      :|||||||.|||.:.||.|::..:|         .:.::...|..||:.||.||.:.:
  Fly   168 L------ILLHGPPGTGKTSLCKALAQKLSIRTQGSYAYTHLVEINSHSLFSKWFSESGKLVAQL 226

  Fly   184 FSLASRI--EP----CIIFIDEIDSFLRSRN-MNDHEATAMMKTQFMML--WDGLSTNANSTVIV 239
            |:..:.:  :|    |:: |||::|...:|: |:.:|....|:....:|  .|.|.|..|  |::
  Fly   227 FNKIAELVSDPNNLVCVL-IDEVESLAYARSAMSSNEPRDAMRVVNAVLTQLDSLKTCPN--VLI 288

  Fly   240 MGATNRPQDLDKAIVRRMPAQFHIGLPSETQRKDILK--------------LILQSEEVSQDVDL 290
            :..:|..|.:|.|.|.|...:..||.|..:..::|.|              .:|:||:..:.: |
  Fly   289 LATSNLAQSIDLAFVDRADIRLFIGYPGISAIREIYKGMLAELMSAGVLQREVLESEDAEEGL-L 352

  Fly   291 NRLSKLTNGFSGSDLREMCRNASVYRMRQLITSRDPSATALDRNNVRITMDDLLGSHLKIKESKM 355
            .:|::.:.|.||..||::          .|:.....:::.|...:.:|::.|.|.:.|:..|..:
  Fly   353 TQLAERSVGLSGRTLRKL----------PLLAHAQYTSSTLFELDQKISLSDFLDAMLEALEQHL 407

  Fly   356 HTSSLF-LENRIEL 368
            ....|. ||:..:|
  Fly   408 GEQRLLKLESMEQL 421

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
nmd	NP_001285801.1	AAA	132..266	CDD:214640	46/151 (30%)
		AAA	135..265	CDD:278434	45/147 (31%)
pch2	NP_001287235.1	AAA	166..315	CDD:214640	47/157 (30%)
		AAA	169..314	CDD:278434	45/147 (31%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0464
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	2	1.810