DRSC/TRiP Functional Genomics Resources

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Protein Alignment nmd and pch2

DIOPT Version :10

Sequence 1:NP_609373.1 Gene:nmd / 44021 FlyBaseID:FBgn0005322 Length:369 Species:Drosophila melanogaster
Sequence 2:NP_524282.4 Gene:pch2 / 41013 FlyBaseID:FBgn0051453 Length:421 Species:Drosophila melanogaster


Alignment Length:55 Identity:17/55 - (30%)
Similarity:24/55 - (43%) Gaps:12/55 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 SSSYDV------DDSSQFQKLA-EKASMVPVTTSDV-SVVMPGDKLPSYVALPAP 101
            |:|.||      .|:..|..:: |.:|..|.|:..: |.|.|    |...|.|.|
  Fly   597 STSQDVATVTDGGDNRTFVSVSGESSSSSPTTSISIPSNVQP----PPQSAKPKP 647

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nmdNP_609373.1 RecA-like_ATAD1 98..263 CDD:410928 2/4 (50%)
AAA_lid_3 287..323 CDD:465537
pch2NP_524282.4 RecA-like_Pch2-like 115..312 CDD:410916
Blue background indicates that the domain is not in the aligned region.

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