DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nmd and CG14183

DIOPT Version :10

Sequence 1:NP_609373.1 Gene:nmd / 44021 FlyBaseID:FBgn0005322 Length:369 Species:Drosophila melanogaster
Sequence 2:NP_649172.3 Gene:CG14183 / 40192 FlyBaseID:FBgn0036931 Length:872 Species:Drosophila melanogaster


Alignment Length:384 Identity:76/384 - (19%)
Similarity:142/384 - (36%) Gaps:106/384 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 YSVKWMMNQMDPTSKNKKKAKV-LAEEQLKRLAEQEGFKLRG--QEFS--DYELMIASHLVVPAD 91
            ||..| .|..:..:||....|. :.||||.::.::    :||  .|:.  :||| :...|....|
  Fly   460 YSKDW-RNVDEYLNKNHDPIKEWVTEEQLAKIHQE----VRGLVDEYMRVEYEL-LREALAKDND 518

  Fly    92 -----ITVSW------------ADIAG---LDSVIQELRES-VVLPIQHKD-------------- 121
                 :.|.:            .|:.|   |:|:..||::: ::..|.|:|              
  Fly   519 EKYKALKVKYPKKKKEKRKKKPKDMTGDRTLESLYNELKDAGIIEEIGHRDFDEFITDFNFVADD 583

  Fly   122 -------------------LFKHSKLWQA------PKGVLLHGPPGCGKTLIAKATAKEAGMRFI 161
                               :.:.|.|...      ||.:||.||...||.|:.:..|.|....|:
  Fly   584 TRDEDGLTTLGPAKGDIKMVIQESMLGMGEFDVPKPKSLLLIGPLNSGKRLLCEIIASELDAVFM 648

  Fly   162 NLDVAILTDKWYGESQKLTSAVFSLASRIEPCIIFIDEIDSF-----------LRSRNMNDHEAT 215
            ||... .|.|:..:.:.....:..:|...:|.|::|:|....           :..|.:....|:
  Fly   649 NLSPE-NTYKYAKDLKYFLHVILKVAKAFQPTIMYIEEAHRLFWKKVPPEAVEINPRLLGTSLAS 712

  Fly   216 AMMKTQFMMLWDGLSTNANSTVIVMGATNRPQDLDKAIVRRMPAQFHIGLPS-ETQRKDILKLIL 279
            .::|          ....|..::::|.:|.|...:..|.|..  |..:.:|. :.....:|.|.|
  Fly   713 KILK----------PLKKNDKIVLVGTSNMPWAANGGIKRAF--QKVLLIPKCDYGTSFLLWLEL 765

  Fly   280 QSEEVSQDVD---LNRLSKLTNGFSGSDLREMCRNA-SVYRMRQLITSRDPSATALDRN 334
            .:|....|:.   .:.|:::...::..|:.:..:.. ::.|..:|      ...|||.|
  Fly   766 MTENAPDDMKEYAYSALARVLQAYNSGDIDDNVKETLNIDRKMRL------KNEALDPN 818

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nmdNP_609373.1 RecA-like_ATAD1 98..263 CDD:410928 42/218 (19%)
AAA_lid_3 287..323 CDD:465537 5/39 (13%)
CG14183NP_649172.3 Adgb_C_mid-like <201..>278 CDD:412094
globin helix H 201..232 CDD:412094
IQCD 247..278 CDD:467745
IQ motif 259..277 CDD:412094
P-loop containing Nucleoside Triphosphate Hydrolases 617..750 CDD:476819 31/145 (21%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.