Protein Alignment nmd and trip13

DIOPT Version :9

• Sequence 1: NP_001285801.1
• Gene: nmd / 44021
• FlyBaseID: FBgn0005322
• Length: 369
• Species: Drosophila melanogaster
• Sequence 2: XP_012819902.1
• Gene: trip13 / 394836
• XenbaseID: XB-GENE-974898
• Length: 440
• Species: Xenopus tropicalis
• Alignment Length: 346
• Identity: 84/346 - (24%)
• Similarity: 146/346 - (42%)
• Gaps: 79/346 - (22%)

  Fly    50 KAKVLAE-EQLKRLAEQEGFKLRGQEFSDYELMIASHLVVPADITVSWADIAGL-DSVI--QELR 110
            |.|||.. .||    .::|..:...|..:.:|:.|:|.::||      ||..|| ||:|  .|::
 Frog   100 KCKVLIHIFQL----NEDGPCVESLEEENEDLVAANHWLLPA------ADFHGLWDSLIYDSEIK 154

  Fly   111 ESVVLPIQHKDLFKHSKL------WQAPKGVLLHGPPGCGKTLIAKATAKEAGMR---------F 160
            ..::..|:...||....:      |.  :.||||||||.|||.:.||.|::..:|         .
 Frog   155 SRLLDYIETAMLFSDKNVDSNLISWN--RVVLLHGPPGTGKTSLCKALAQKLTIRLSYRYRYGQL 217

  Fly   161 INLDVAILTDKWYGESQKLTSAVFSLASRI---EPCIIF--IDEIDSFLRSRNMN-----DHEAT 215
            :.::...|..||:.||.||.:.:|.....:   :..::|  |||::|...:|..:     ..:|.
 Frog   218 VEINSHSLFSKWFSESGKLVTKMFQKIHELINDKEALVFVLIDEVESLTAARKASRAGTEPSDAI 282

  Fly   216 AMMKTQFMMLWDGLSTNANSTVIVMGATNRPQDLDKAIVRRMPAQFHIGLPSETQRKDILKLILQ 280
            .::......: |.:....|  |:::..:|..:.:|.|...|...:.:||.||...   |.|:.|
 Frog   283 RVVNAVLTQI-DHIKRYPN--VVILSTSNLTEKIDVAFTDRADIKQYIGPPSPAA---IFKIYL- 340

  Fly   281 SEEVSQDVDLNRLSKLTNGFSGSDLREMCRNASVYRMRQLITSRDPSATALDRNNVRITMDDLLG 345
                                  |.:.|:.:...:|..:||:|.||........||:
 Frog   341 ----------------------SCIEELMKCQIIYPKQQLLTLRDLEIIGFLENNI--------- 374

  Fly   346 SHLKIKESKMHTSSLFLENRI 366
            |.|.::.:::...|..|..|:
 Frog   375 SKLSLQLNEISRKSEGLSGRV 395

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
nmd	NP_001285801.1	AAA	132..266	CDD:214640	39/152 (26%)
		AAA	135..265	CDD:278434	38/148 (26%)
trip13	XP_012819902.1	SpoVK	<144..394	CDD:223540	66/289 (23%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910