DRSC/TRiP Functional Genomics Resources

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Protein Alignment nmd and CG4701

DIOPT Version :9

Sequence 1:NP_001285801.1 Gene:nmd / 44021 FlyBaseID:FBgn0005322 Length:369 Species:Drosophila melanogaster
Sequence 2:NP_609721.1 Gene:CG4701 / 34858 FlyBaseID:FBgn0028868 Length:384 Species:Drosophila melanogaster


Alignment Length:375 Identity:221/375 - (58%)
Similarity:285/375 - (76%) Gaps:20/375 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 QIFQVLVRLSVASLITYYSVKWMMNQMDPTSKNKKKAKVLAEEQLKRL---AEQEGFKLRGQEFS 76
            ||..:::|:.|.|.:|||:.|||:|.:||.:|.:.|||.:|||||::|   |.....|.|.::|:
  Fly    10 QILAIVIRVCVFSALTYYTAKWMINALDPNNKIRGKAKYVAEEQLRKLNSSAIGAAKKFRARDFN 74

  Fly    77 DYELMIASHLVVPADITVSWADIAGLDSVIQELRESVVLPIQHKDLFKHSKLWQAPKGVLLHGPP 141
            ::|:|||||||.|.||.:||:||||||..||||||:||||::|:.||..||||:|||||||||||
  Fly    75 EHEMMIASHLVTPEDIDISWSDIAGLDGTIQELRETVVLPVRHRKLFSRSKLWRAPKGVLLHGPP 139

  Fly   142 GCGKTLIAKATAKEAGMRFINLDVAILTDKWYGESQKLTSAVFSLASRIEPCIIFIDEIDSFLRS 206
            ||||||||||.||:||||||||||.:||||||||||||.:|||:||.:::|||||||||:||||.
  Fly   140 GCGKTLIAKAIAKDAGMRFINLDVGVLTDKWYGESQKLATAVFTLAKKLQPCIIFIDEIESFLRM 204

  Fly   207 RNMNDHEATAMMKTQFMMLWDGLSTNANSTVIVMGATNRPQDLDKAIVRRMPAQFHIGLPSETQR 271
            |..||||||||:|||||:.||||.:|.|..|:|:|||||||||||||:||||||||||:|.:.||
  Fly   205 RGSNDHEATAMIKTQFMLQWDGLMSNTNICVLVLGATNRPQDLDKAILRRMPAQFHIGVPRDCQR 269

  Fly   272 KDILKLILQSEEVSQDVDLNRLSKLTNGFSGSDLREMCRNASVYRMRQLITSRDPSATALDRNNV 336
            ::||:||||:|::|..|:|..|::||.|||||||||:||:||:|||||.:..:..:...:.::.:
  Fly   270 REILQLILQTEQLSPSVNLKELARLTIGFSGSDLRELCRHASMYRMRQFMREKLNTGEEIGKDKI 334

  Fly   337 -----------------RITMDDLLGSHLKIKESKMHTSSLFLENRIELD 369
                             .|.|:|||.|...:|.||......|||..:|||
  Fly   335 EWDFEVKDQALQEWEHLEIQMEDLLKSLSVMKASKHQAQGTFLEKDLELD 384

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nmdNP_001285801.1 AAA 132..266 CDD:214640 107/133 (80%)
AAA 135..265 CDD:278434 103/129 (80%)
CG4701NP_609721.1 Parvo_NS1 47..>152 CDD:305166 68/104 (65%)
AAA 130..265 CDD:214640 107/134 (80%)
AAA 133..265 CDD:278434 104/131 (79%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45470091
Domainoid 1 1.000 167 1.000 Domainoid score I1188
eggNOG 1 0.900 - - E1_COG0464
Homologene 1 1.000 - - H5960
Inparanoid 1 1.050 265 1.000 Inparanoid score I945
Isobase 1 0.950 - 0 Normalized mean entropy S651
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1430018at2759
OrthoFinder 1 1.000 - - FOG0002611
OrthoInspector 1 1.000 - - mtm6343
orthoMCL 1 0.900 - - OOG6_103164
Panther 1 1.100 - - P PTHR45644
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1910
SonicParanoid 1 1.000 - - X1716
1413.780

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