DRSC/TRiP Functional Genomics Resources

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Protein Alignment nmd and Fign

DIOPT Version :10

Sequence 1:NP_609373.1 Gene:nmd / 44021 FlyBaseID:FBgn0005322 Length:369 Species:Drosophila melanogaster
Sequence 2:NP_608763.2 Gene:Fign / 33544 FlyBaseID:FBgn0031519 Length:523 Species:Drosophila melanogaster


Alignment Length:395 Identity:124/395 - (31%)
Similarity:200/395 - (50%) Gaps:84/395 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 LSVASLITY---YSVKWMMNQMDPTSKNKKKAKVLAEEQLKRLAEQEGF---------------K 69
            |.|:|  ||   .:||.......|.|:|....|:.|::.....:.|.||               |
  Fly   107 LEVSS--TYPVQQAVKSRPEGQFPESRNNSTKKIDAQQYSSESSSQSGFGFRTAREQLIMDELKK 169

  Fly    70 LRGQEFSDYELM-----------------IASHLVVPA--------------------------- 90
            ...|..|:.:.:                 ::|:.|.|.                           
  Fly   170 KNRQATSEVDAVPTGMMNFRKKTLGGKRTVSSNFVSPVAQNDNSTSSRSSSIPPALAHLDSKMVD 234

  Fly    91 --------DI-TVSWADIAGLDSVIQELRESVVLPIQHKDLFKHSKLWQAPKGVLLHGPPGCGKT 146
                    |. .|:|.|||||:|......|::::|::..|||...:.  .|:||||.||||.|||
  Fly   235 HILGESMHDFKPVAWEDIAGLESAKSTFLEAIIMPLRRPDLFTGVRC--PPRGVLLFGPPGTGKT 297

  Fly   147 LIAKATAKEAGMRFINLDVAILTDKWYGESQKLTSAVFSLASRIEPCIIFIDEIDSFLRSRNMND 211
            ||||:.|.:|..:|.:::.:.||.||.|:::||...:|::|:..:|.||||||:||.|..|:.|:
  Fly   298 LIAKSIASQAKAKFFSINPSSLTSKWVGDAEKLVKTLFAVAAAHQPAIIFIDEVDSLLSKRSANE 362

  Fly   212 HEATAMMKTQFMMLWDGLSTNANSTVIVMGATNRPQDLDKAIVRRMPAQFHIGLPS-ETQRKDIL 275
            :|:|..:|.:|::..||.::|....|:|:|||||||:||:|:.||...:.::.||: |.::|.|.
  Fly   363 NESTLRLKNEFLIHLDGAASNEEIRVLVIGATNRPQELDEAVRRRFVRRLYVPLPTREARQKIIE 427

  Fly   276 KLILQSEEVSQDVDLNR---LSKLTNGFSGSDLREMCRNASVYRMRQLITSRDPSATALDRNNVR 337
            |||   .:|..::|:.:   |::||:|:||:|:..:||.||:..:|.|  :.|............
  Fly   428 KLI---HQVKHNLDVRQVIELAELTDGYSGADVDTLCRYASMAPLRSL--TPDQMEVIETHQLPA 487

  Fly   338 ITMDD 342
            :||||
  Fly   488 VTMDD 492

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nmdNP_609373.1 RecA-like_ATAD1 98..263 CDD:410928 72/164 (44%)
AAA_lid_3 287..323 CDD:465537 14/38 (37%)
FignNP_608763.2 PH-like <4..50 CDD:473070
P-loop containing Nucleoside Triphosphate Hydrolases 229..414 CDD:476819 75/186 (40%)
AAA_lid_3 444..495 CDD:465537 18/51 (35%)
Vps4_C <480..520 CDD:462762 4/13 (31%)
Blue background indicates that the domain is not in the aligned region.

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