DRSC/TRiP Functional Genomics Resources

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Protein Alignment nmd and vcp

DIOPT Version :10

Sequence 1:NP_609373.1 Gene:nmd / 44021 FlyBaseID:FBgn0005322 Length:369 Species:Drosophila melanogaster
Sequence 2:NP_958889.1 Gene:vcp / 327197 ZFINID:ZDB-GENE-030131-5408 Length:806 Species:Danio rerio


Alignment Length:322 Identity:112/322 - (34%)
Similarity:168/322 - (52%) Gaps:57/322 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 ITYYSVKWMMNQMDPTSKNKKKAKVLAEEQLKRLAEQEGFKLRGQEFSDYELMIASHLVVPADIT 93
            :|....:|.::|.:|::        |.|..::                           ||   .
Zfish   447 VTMDDFRWALSQSNPSA--------LRETVVE---------------------------VP---N 473

  Fly    94 VSWADIAGLDSVIQELRESVVLPIQHKDLFKHSKLWQAP-KGVLLHGPPGCGKTLIAKATAKEAG 157
            ::|.||.|||.|.:||:|.|..|::|.|  |..|....| ||||.:|||||||||:|||.|.|..
Zfish   474 ITWEDIGGLDDVKRELQELVQYPVEHPD--KFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536

  Fly   158 MRFINLDVAILTDKWYGESQKLTSAVFSLASRIEPCIIFIDEIDSFLRSR--NMNDHEATA-MMK 219
            ..||::....|...|:|||:.....:|..|.:..||::|.||:||..::|  |:.|....| .:.
Zfish   537 ANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNVGDGGGAADRVI 601

  Fly   220 TQFMMLWDGLSTNANSTVIVMGATNRPQDLDKAIVR--RMPAQFHIGLPSETQRKDILKLILQSE 282
            .|.:...||:|:..|  |.::||||||..:|.||:|  |:....:|.||.|..|..|||..|:..
Zfish   602 NQILTEMDGMSSKKN--VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRIAILKANLRKS 664

  Fly   283 EVSQDVDLNRLSKLTNGFSGSDLREMCRNASVYRMRQLITSR---------DPSATALDRNN 335
            .:|:||||:.|:|:||||||:||.|:|:.|....:|:.|.:.         :|||..::.::
Zfish   665 PISKDVDLDFLAKMTNGFSGADLTEICQRACKLAIRESIENEIRRERERQTNPSAMEVEEDD 726

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nmdNP_609373.1 RecA-like_ATAD1 98..263 CDD:410928 71/170 (42%)
AAA_lid_3 287..323 CDD:465537 19/35 (54%)
vcpNP_958889.1 CDC48 25..764 CDD:273521 112/322 (35%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 708..727 3/19 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 768..806
Blue background indicates that the domain is not in the aligned region.

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