DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nmd and si:dkey-195m11.8

DIOPT Version :9

Sequence 1:NP_001285801.1 Gene:nmd / 44021 FlyBaseID:FBgn0005322 Length:369 Species:Drosophila melanogaster
Sequence 2:XP_003198869.1 Gene:si:dkey-195m11.8 / 324372 ZFINID:ZDB-GENE-030131-3092 Length:269 Species:Danio rerio


Alignment Length:64 Identity:18/64 - (28%)
Similarity:28/64 - (43%) Gaps:12/64 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   294 SKLTNGFSGSDLREMC-RNASVYRMRQLITSRDPSATALDRNNVRITMDDLLGSHLKIKESKMH 356
            |:..||.||..:.|.| .:...||..:|.|..|..|.|..::           |||:..|::.:
Zfish   208 SERQNGDSGGSVNESCGTDIQSYRPERLSTLPDLEADAEGKS-----------SHLRPLETRSY 260

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nmdNP_001285801.1 AAA 132..266 CDD:214640
AAA 135..265 CDD:278434
si:dkey-195m11.8XP_003198869.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0464
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.