Protein Alignment nmd and Iqca1

DIOPT Version :10

• Sequence 1: NP_609373.1
• Gene: nmd / 44021
• FlyBaseID: FBgn0005322
• Length: 369
• Species: Drosophila melanogaster
• Sequence 2: NP_001418200.1
• Gene: Iqca1 / 316616
• RGDID: 1305311
• Length: 836
• Species: Rattus norvegicus
• Alignment Length: 374
• Identity: 74/374 - (19%)
• Similarity: 150/374 - (40%)
• Gaps: 99/374 - (26%)

  Fly    32 YSVKWM--------MNQMDPTSKNKKKAKVLAEE---QLKRLAEQE--GFKL------------- 70
            |...||        ....||....::|.|.|..|   |:..|..||  ..||
  Rat   408 YKDMWMNKDESWNFPQDYDPELVKEEKRKELEMEIRVQVDELMRQELKNLKLAVNREIEPQPRLK 472

  Fly    71 ---------------RGQEFSD----------YELMIASHLVVPADITVSWADIAG--------- 101
                           ||::..|          |:.::...|::.| :.|..:|..|
  Rat   473 KGKKQNKGRKGRRGKRGKKDKDLTADRTIESLYQELVEEGLLIQA-LKVKLSDYIGEYSYLGTTL 536

  Fly   102 -------LDSVIQELRESV----VLPIQHKDLFKHSKLWQAPKGVLLHGPPGCGKTLIAKATAKE 155
                   :.|:: ::|:.:    :||:...::.:.:.|   .|.:||.||||.||.::..|...|
  Rat   537 RQVAIEPMPSLL-DVRQLITLYGILPLGSAEVHERAPL---VKSLLLAGPPGVGKKMLVHAICTE 597

  Fly   156 AGMRFINLDVAILTDKWYGES--QKLTSAVFSLASRIEPCIIFIDEIDSFL-----RSRNMNDHE 213
            .|....||..:.:..|:.|::  |.:...||.:|.:::|.:::|.:.:...     ::...|:.:
  Rat   598 TGANLFNLSSSNIAGKYPGKTGLQMMIHLVFKVARQLQPSVVWIQDTEKTFYKKVPQAEKRNEPK 662

  Fly   214 ATAMMKTQFMMLWDGLSTNANSTVIVMGATNRPQDLD-KAIVRRMPAQFHIGLPSETQRKDILKL 277
            .......:.:.|     ...:..::::|.|:||.|.: ::..|.......:..|....|..:.|.
  Rat   663 RLKKYLPKLLKL-----LRPDDRILIVGTTHRPFDAELQSFCRVYQKIILVPRPDYASRYVLWKQ 722

  Fly   278 IL--QSEEVSQDVDLNRLSKLTNGFSGSDLREMCRNASVYRMRQLITSR 324
            |:  ...||:..::::.|||:|:||:...:        |:.:::::|.|
  Rat   723 IILRNGGEVTNALNISCLSKVTDGFTQGQI--------VHVIKEVLTER 763

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
nmd	NP_609373.1	RecA-like_ATAD1	98..263	CDD:410928	37/192 (19%)
		AAA_lid_3	287..323	CDD:465537	7/35 (20%)
Iqca1	NP_001418200.1	CDC48	<420..758	CDD:273521	69/355 (19%)
		P-loop containing Nucleoside Triphosphate Hydrolases	549..708	CDD:476819	34/166 (20%)