Protein Alignment nmd and CG10793

DIOPT Version :10

• Sequence 1: NP_609373.1
• Gene: nmd / 44021
• FlyBaseID: FBgn0005322
• Length: 369
• Species: Drosophila melanogaster
• Sequence 2: NP_570054.2
• Gene: CG10793 / 31308
• FlyBaseID: FBgn0288967
• Length: 479
• Species: Drosophila melanogaster
• Alignment Length: 328
• Identity: 100/328 - (30%)
• Similarity: 166/328 - (50%)
• Gaps: 44/328 - (13%)

  Fly    58 QLKRL------------AEQEGFKLRGQE--FSDYELMIASHLV----VPADITVSWADIAGLDS 104
            |:|::            .|.|...|.|.:  ||..|....:.||    :..:|.:.|:|:.|...
  Fly   149 QIKKMETATESNGQDNACEIEHVHLGGDDVLFSSLEWQSLAELVKTSILQENIKIKWSDVCGNQR 213

  Fly   105 VIQELRESVVLPIQHKDLFKHS-KLWQAPKGVLLHGPPGCGKTLIAKATAKE--AGMRFINLDVA 166
            .|:.::|:|:.||:...||.|. |.|   :.:|||||||.||||:|||...|  ..:.|.|:..:
  Fly   214 AIELIKEAVLTPIEFPQLFAHGLKPW---RSLLLHGPPGSGKTLLAKALYSETQGQVTFFNITAS 275

  Fly   167 ILTDKWYGESQKLTSAVFSLASRIEPCIIFIDEIDSFLRSRN-MNDHEATAMMKTQFMMLWDGLS 230
            |:..||.|||:|:...:|.:|::..|.:||.|||:|....|: ..|||::...|.:.:.|.||:.
  Fly   276 IMVSKWRGESEKILRVLFHMAAKRAPSVIFFDEIESLTSKRDRATDHESSKRFKNELLQLLDGME 340

  Fly   231 TNANSTVIVMGATNRPQDLDKAIVRRMPAQFHIGLPSETQRKDILKLILQSEEVSQDVDLNRLSK 295
            .:.|. |.|:.:||.|.|:|:|.:||...:..:.||:..:|..::..:|.|........|.:|.:
  Fly   341 HSLNG-VFVLASTNLPWDIDEAFLRRFEKKLLVQLPNAAERSCLINRLLGSSISLNPRLLEQLVE 404

  Fly   296 LTNGFSGSDLREMCRNASVYRMR----------QLITSRDPSATALDRN------NVRITMDDLL 344
            :::.|:|.::|..|:..|::|:|          .|:....|:  |::.|      .||.....||
  Fly   405 ISDHFTGDEIRLACKEISMHRVRCATKIGDRSIGLLAKESPA--AIEANVEKAFRQVRPLGQKLL 467

  Fly   345 GSH 347
            ..|
  Fly   468 AKH 470

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
nmd	NP_609373.1	RecA-like_ATAD1	98..263	CDD:410928	64/168 (38%)
		AAA_lid_3	287..323	CDD:465537	10/45 (22%)
CG10793	NP_570054.2	LisH	31..55	CDD:462501
		RecA-like_VPS4-like	208..372	CDD:410917	63/167 (38%)