Protein Alignment nmd and Katna1

DIOPT Version :10

• Sequence 1: NP_609373.1
• Gene: nmd / 44021
• FlyBaseID: FBgn0005322
• Length: 369
• Species: Drosophila melanogaster
• Sequence 2: NP_001004217.2
• Gene: Katna1 / 292464
• RGDID: 1303062
• Length: 493
• Species: Rattus norvegicus
• Alignment Length: 323
• Identity: 113/323 - (34%)
• Similarity: 181/323 - (56%)
• Gaps: 18/323 - (5%)

  Fly    45 SKNKKKAKVLAEEQLK---RLAEQEGFKLRGQEFSDYELMIA-SHLVVPADITVSWADIAGLDSV 105
            |:.||:.....||:.|   .:.|.|..|.....: |.:|:.| ...::..:..|.|.|||.|...
  Rat   156 SREKKEQSKGREEKNKLPAAVTEPEANKFDSTGY-DKDLVEALERDIISQNPNVRWYDIADLVEA 219

  Fly   106 IQELRESVVLPIQHKDLFKH-SKLWQAPKGVLLHGPPGCGKTLIAKATAKEAGMRFINLDVAILT 169
            .:.|:|:||||:...:.||. .:.|   ||||:.||||.||||:|||.|.|....|.|:..:.||
  Rat   220 KKLLQEAVVLPMWMPEFFKGIRRPW---KGVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLT 281

  Fly   170 DKWYGESQKLTSAVFSLASRIEPCIIFIDEIDSFLRSRNMN-DHEATAMMKTQFMMLWDGL---- 229
            .|:.|||:||...:|.:|....|..||||||||....|..: :|||:..:|.:.::..||:
  Rat   282 SKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRRGTSEEHEASRRVKAELLVQMDGVGGAS 346

  Fly   230 -STNANSTVIVMGATNRPQDLDKAIVRRMPAQFHIGLPSETQRKDILKLILQSEEVSQDVDLNRL 293
             :.:.:..|:|:.|||.|.|:|:|:.||:..:.:|.|||...|:::|::.|:..|::.||:|..:
  Rat   347 ENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRISLRELELADDVNLASI 411

  Fly   294 SKLTNGFSGSDLREMCRNASVYRMRQLITSRDPSATA-LDRNNVRI--TMDDLLGSHLKIKES 353
            ::...|:||:|:..:||:||:..||:.|....|.... |.|..:.:  ||:|...:..|:.:|
  Rat   412 AENMEGYSGADITNVCRDASLMAMRRRIEGLTPEEIRNLSREEMHMPTTMEDFEMALKKVSKS 474

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
nmd	NP_609373.1	RecA-like_ATAD1	98..263	CDD:410928	69/171 (40%)
		AAA_lid_3	287..323	CDD:465537	14/35 (40%)
Katna1	NP_001004217.2	Kp60-NTD	7..74	CDD:439297
		RPT1	134..474	CDD:440835	112/321 (35%)
		RecA-like_KTNA1	212..381	CDD:410930	69/171 (40%)