Protein Alignment nmd and Nvl

DIOPT Version :10

• Sequence 1: NP_609373.1
• Gene: nmd / 44021
• FlyBaseID: FBgn0005322
• Length: 369
• Species: Drosophila melanogaster
• Sequence 2: NP_001099450.1
• Gene: Nvl / 289323
• RGDID: 1311270
• Length: 855
• Species: Rattus norvegicus
• Alignment Length: 347
• Identity: 103/347 - (29%)
• Similarity: 174/347 - (50%)
• Gaps: 60/347 - (17%)

  Fly    37 MMNQMDPTSKNKKKAK-------VLAEEQLKRLAEQEGFKLRGQEFSDYELMIASHLVVPADITV 94
            ::...||.|:.:.:..       ::|..:::..|::|||                 :.||   .|
  Rat   533 LLRDQDPISEEQMQGLCLELNDFIVALSEVQPSAKREGF-----------------VTVP---NV 577

  Fly    95 SWADIAGLDSVIQELRESVVLPIQHKDLFKHSKLWQAPKGVLLHGPPGCGKTLIAKATAKEAGMR 159
            :|||:..|:.:.:||..:::.|:::.:.|:...| .||.||||.|||||||||:|||.|.|:|:.
  Rat   578 TWADVGALEDIREELTMAILAPVRNPEQFRALGL-VAPAGVLLAGPPGCGKTLLAKAVANESGLN 641

  Fly   160 FINLDVAILTDKWYGESQKLTSAVFSLASRIEPCIIFIDEIDSFLRSRNMNDHEATAMMKTQFMM 224
            ||::....|.:.:.|||::....||..|....||:||.||:|:....|:..:..|:..:..|.:.
  Rat   642 FISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLT 706

  Fly   225 LWDGLSTNANSTVIVMGATNRPQDLDKAIVR--RMPAQFHIGLPSETQRKDILKLILQS---EEV 284
            ..|||.|  ...|.::.|||||..:|.||:|  |:.....:|||....|..|||.|.::   ..:
  Rat   707 EMDGLET--RQQVFILAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRVAILKTITKNGTKPPL 769

  Fly   285 SQDVDLNRLSK--LTNGFSGSDLREMCRNASVYRMRQLITSRDPSATALDRNNVRITMDDLLGSH 347
            .:||||..::.  ..:.::|:||..:.|.||:..:||.||.:        :|.:...  :|..||
  Rat   770 DEDVDLEAIANDHRCDCYTGADLSALVREASLCALRQEITGQ--------KNGIGTA--ELTVSH 824

  Fly   348 -------------LKIKESKMH 356
                         :.:|:.:|:
  Rat   825 KHFEEAFRKVKPSISVKDQRMY 846

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
nmd	NP_609373.1	RecA-like_ATAD1	98..263	CDD:410928	62/166 (37%)
		AAA_lid_3	287..323	CDD:465537	13/37 (35%)
Nvl	NP_001099450.1	Nucleolin_bd	2..71	CDD:465247
		CDC48	<255..855	CDD:273521	103/347 (30%)