DRSC/TRiP Functional Genomics Resources

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Protein Alignment nmd and knk1

DIOPT Version :10

Sequence 1:NP_609373.1 Gene:nmd / 44021 FlyBaseID:FBgn0005322 Length:369 Species:Drosophila melanogaster
Sequence 2:NP_595275.1 Gene:knk1 / 2541249 PomBaseID:SPBC947.01 Length:660 Species:Schizosaccharomyces pombe


Alignment Length:256 Identity:97/256 - (37%)
Similarity:151/256 - (58%) Gaps:15/256 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    76 SDYELMIASHLVVPADITVSWADIAGLDSVIQELRESVVLPIQHKDLFKHSKLWQAPKGVLLHGP 140
            ||:|..|.:.::...: .|.|:||||||.....|:|:|:.|....:||:  .|.:..:|:||.||
pombe   359 SDFEYAIMNEIISNHE-PVYWSDIAGLDDAKNSLKEAVIYPFLRPELFQ--GLREPVQGMLLFGP 420

  Fly   141 PGCGKTLIAKATAKEAGMRFINLDVAILTDKWYGESQKLTSAVFSLASRIEPCIIFIDEIDSFLR 205
            ||.|||::|:|.|.||...|.::..:.||.|:.|:|:||..|:|.:|.|....:||:|||||.|.
pombe   421 PGTGKTMLARAVATEAKATFFSISASSLTSKYLGDSEKLVRALFEVAKRQTCSVIFVDEIDSILS 485

  Fly   206 SRN--MNDHEATAMMKTQFMMLWDGLSTNA--------NSTVIVMGATNRPQDLDKAIVRRMPAQ 260
            :||  .|:||::..:||:|::.|..| |||        :..|:|:.|||.|..:|:|..||...:
pombe   486 ARNDSGNEHESSRRLKTEFLIQWSSL-TNAAPDKQTGHSPRVLVLAATNLPWCIDEAARRRFVKR 549

  Fly   261 FHIGLP-SETQRKDILKLILQSEEVSQDVDLNRLSKLTNGFSGSDLREMCRNASVYRMRQL 320
            .:|.|| .||:.|.:..|:........:.||..|..||.|:||||:..:.::|::..:|.|
pombe   550 TYIPLPEKETRYKHLSHLLHNQVHCLTEEDLEELVNLTEGYSGSDITALAKDAAMGPLRNL 610

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nmdNP_609373.1 RecA-like_ATAD1 98..263 CDD:410928 71/174 (41%)
AAA_lid_3 287..323 CDD:465537 13/34 (38%)
knk1NP_595275.1 Herpes_BLLF1 <221..>359 CDD:282904 97/256 (38%)
RecA-like_VPS4-like 381..552 CDD:410917 70/173 (40%)
AAA_lid_3 577..614 CDD:465537 13/34 (38%)
Vps4_C <623..657 CDD:462762
Blue background indicates that the domain is not in the aligned region.

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