DRSC/TRiP Functional Genomics Resources

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Protein Alignment nmd and Katna1

DIOPT Version :10

Sequence 1:NP_609373.1 Gene:nmd / 44021 FlyBaseID:FBgn0005322 Length:369 Species:Drosophila melanogaster
Sequence 2:NP_035965.3 Gene:Katna1 / 23924 MGIID:1344353 Length:491 Species:Mus musculus


Alignment Length:323 Identity:116/323 - (35%)
Similarity:182/323 - (56%) Gaps:18/323 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 SKNKKKAKVLAEEQLK---RLAEQEGFKLRGQEFSDYELMIA-SHLVVPADITVSWADIAGLDSV 105
            |:.||:.....||:.|   .:.|.|..|..|..: |.:|:.| ...::..:..|.|.|||.|...
Mouse   154 SREKKEQSKGREEKNKLPAAVTEPEANKFDGTGY-DKDLVEALERDIISQNPNVRWYDIADLVEA 217

  Fly   106 IQELRESVVLPIQHKDLFKH-SKLWQAPKGVLLHGPPGCGKTLIAKATAKEAGMRFINLDVAILT 169
            .:.|:|:||||:...:.||. .:.|   ||||:.||||.||||:|||.|.|....|.|:..:.||
Mouse   218 KKLLQEAVVLPMWMPEFFKGIRRPW---KGVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLT 279

  Fly   170 DKWYGESQKLTSAVFSLASRIEPCIIFIDEIDSFLRSRNMN-DHEATAMMKTQFMMLWDGL---- 229
            .|:.|||:||...:|.:|....|..||||||||....|..: :|||:..||.:.::..||:    
Mouse   280 SKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRRGTSEEHEASRRMKAELLVQMDGVGGAS 344

  Fly   230 -STNANSTVIVMGATNRPQDLDKAIVRRMPAQFHIGLPSETQRKDILKLILQSEEVSQDVDLNRL 293
             :.:.:..|:|:.|||.|.|:|:|:.||:..:.:|.|||...|:::|::.|:..|::.||:|..:
Mouse   345 ENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRISLRELELADDVNLASI 409

  Fly   294 SKLTNGFSGSDLREMCRNASVYRMRQLITSRDPSATA-LDRNNVRI--TMDDLLGSHLKIKES 353
            ::...|:||:|:..:||:||:..||:.|....|.... |.|..:.:  ||:|...:..||.:|
Mouse   410 AENMEGYSGADITNVCRDASLMAMRRRIEGLTPEEIRNLSREAMHMPTTMEDFEMALKKISKS 472

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nmdNP_609373.1 RecA-like_ATAD1 98..263 CDD:410928 70/171 (41%)
AAA_lid_3 287..323 CDD:465537 14/35 (40%)
Katna1NP_035965.3 Interaction with microtubules, sufficient for microtubule severing activity. /evidence=ECO:0000269|PubMed:28436967 1..185 9/30 (30%)
Interaction with dynein and NDEL1. /evidence=ECO:0000250 1..75
Interaction with KATNB1 1..29
Kp60-NTD 4..72 CDD:439297
SpoVK 61..469 CDD:440232 113/318 (36%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 101..182 8/27 (30%)
RecA-like_KTNA1 210..379 CDD:410930 70/171 (41%)
Vps4_C <456..489 CDD:462762 6/17 (35%)
Blue background indicates that the domain is not in the aligned region.

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