DRSC/TRiP Functional Genomics Resources

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Protein Alignment nmd and Katnal1

DIOPT Version :10

Sequence 1:NP_609373.1 Gene:nmd / 44021 FlyBaseID:FBgn0005322 Length:369 Species:Drosophila melanogaster
Sequence 2:NP_705800.1 Gene:Katnal1 / 231912 MGIID:2387638 Length:488 Species:Mus musculus


Alignment Length:343 Identity:118/343 - (34%)
Similarity:187/343 - (54%) Gaps:24/343 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 MNQMDPTSKNKKKAKVLAEEQLKRLAEQEGF------KLRGQEFSDYELMIA-SHLVVPADITVS 95
            :::.|..:...|..:....:...|...|:|.      |..|..: |.:|:.| ...:|..:.::.
Mouse   141 ISKSDKPASRDKDYRARGRDDKARKNVQDGASDSEIPKFDGAGY-DKDLVEALERDIVSRNPSIH 204

  Fly    96 WADIAGLDSVIQELRESVVLPIQHKDLFKH-SKLWQAPKGVLLHGPPGCGKTLIAKATAKEAGMR 159
            |.|||.|:...:.|||:||||:...|.||. .:.|   ||||:.||||.|||::|||.|.|.|..
Mouse   205 WDDIADLEEAKKLLREAVVLPMWMPDFFKGIRRPW---KGVLMVGPPGTGKTMLAKAVATECGTT 266

  Fly   160 FINLDVAILTDKWYGESQKLTSAVFSLASRIEPCIIFIDEIDSFLRSRNMND-HEATAMMKTQFM 223
            |.|:..:.||.|:.|||:||...:|.:|....|..||||||||....|..:| |||:..:|::.:
Mouse   267 FFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSELL 331

  Fly   224 MLWDGL-----STNANSTVIVMGATNRPQDLDKAIVRRMPAQFHIGLPSETQRKDILKLILQSEE 283
            :..||:     :.:.:..|:|:.|||.|.|:|:|:.||:..:.:|.||:...|.::||:.|:..|
Mouse   332 IQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKISLREVE 396

  Fly   284 VSQDVDLNRLSKLTNGFSGSDLREMCRNASVYRMRQLITSRDP-SATALDRNNVR--ITMDDLLG 345
            :..||.|..::..|.|:||:|:..:||:||:..||:.|....| ...||.:..::  :|..||  
Mouse   397 LDPDVHLEDIADKTEGYSGADITNICRDASLMAMRRRINGLSPEEIRALSKEELQMPVTRGDL-- 459

  Fly   346 SHLKIKESKMHTSSLFLE 363
             .|.:|:.....|:..||
Mouse   460 -ELALKKIAKSVSAADLE 476

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nmdNP_609373.1 RecA-like_ATAD1 98..263 CDD:410928 72/171 (42%)
AAA_lid_3 287..323 CDD:465537 15/35 (43%)
Katnal1NP_705800.1 Kp60-NTD 4..72 CDD:439297
SpoVK 52..452 CDD:440232 110/314 (35%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 95..179 5/37 (14%)
RecA-like_KTNA1 207..376 CDD:410930 72/171 (42%)
Vps4_C <448..486 CDD:462762 8/32 (25%)
Blue background indicates that the domain is not in the aligned region.

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