Protein Alignment nmd and mspn-1

DIOPT Version :10

• Sequence 1: NP_609373.1
• Gene: nmd / 44021
• FlyBaseID: FBgn0005322
• Length: 369
• Species: Drosophila melanogaster
• Sequence 2: NP_501860.1
• Gene: mspn-1 / 177896
• WormBaseID: WBGene00010557
• Length: 342
• Species: Caenorhabditis elegans
• Alignment Length: 312
• Identity: 142/312 - (45%)
• Similarity: 214/312 - (68%)
• Gaps: 9/312 - (2%)

  Fly    13 KGQIFQVLVRLSVASLITYYSVKWMMNQMDPT-SKNKKKAKVLAEEQLKRLAEQEGFKLRGQEFS 76
            :.::..|.:|:..|:.:::.||::::..:||. |.|::..|.:|:     |..:.|.. |..|.|
 Worm     4 RNELIGVAIRVVAAAAVSFLSVRYLVKYLDPNYSVNEESKKKVAQ-----LFHELGID-RQIELS 62

  Fly    77 DYELMIASHLVVPADITVSWADIAGLDSVIQELRESVVLPIQHKDLFKHSKLWQAPKGVLLHGPP 141
            ::|:.||:..|...|:...|.:|.|.:.::.||::.::||::.... ..|.|...|:|:||:|||
 Worm    63 EHEIRIATQFVGGEDVGADWDEIGGCEELVAELKDRIILPLRFASQ-SGSHLLSPPRGILLYGPP 126

  Fly   142 GCGKTLIAKATAKEAGMRFINLDVAILTDKWYGESQKLTSAVFSLASRIEPCIIFIDEIDSFLRS 206
            ||||||:|||.|:.||.|||||.|:.||||||||||||.:||||:|.:.:|.||||||||||||.
 Worm   127 GCGKTLLAKAVARAAGCRFINLQVSNLTDKWYGESQKLAAAVFSVAQKFQPTIIFIDEIDSFLRD 191

  Fly   207 RNMNDHEATAMMKTQFMMLWDGLSTNANSTVIVMGATNRPQDLDKAIVRRMPAQFHIGLPSETQR 271
            |..:|||:|||||.|||.||||.|::.:. :|||||||||:|:|.||:|||.|:|.:.:|:..||
 Worm   192 RQSHDHESTAMMKAQFMTLWDGFSSSGDQ-IIVMGATNRPRDVDAAILRRMTARFQVPVPNAKQR 255

  Fly   272 KDILKLILQSEEVSQDVDLNRLSKLTNGFSGSDLREMCRNASVYRMRQLITS 323
            ..||.:||::|:::..|:|..:::...|.|||||:|:||.|.:.|.:..:.|
 Worm   256 SQILNVILRNEKINNTVNLGEIAQAAEGLSGSDLKEVCRLALLARAKATVAS 307

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
nmd	NP_609373.1	RecA-like_ATAD1	98..263	CDD:410928	98/164 (60%)
		AAA_lid_3	287..323	CDD:465537	13/35 (37%)
mspn-1	NP_501860.1	RecA-like_ATAD1	84..247	CDD:410928	98/164 (60%)
		AAA_lid_3	272..>302	CDD:465537	13/29 (45%)