Protein Alignment nmd and cdc-48.2

DIOPT Version :10

• Sequence 1: NP_609373.1
• Gene: nmd / 44021
• FlyBaseID: FBgn0005322
• Length: 369
• Species: Drosophila melanogaster
• Sequence 2: NP_495705.1
• Gene: cdc-48.2 / 174309
• WormBaseID: WBGene00008053
• Length: 810
• Species: Caenorhabditis elegans
• Alignment Length: 330
• Identity: 117/330 - (35%)
• Similarity: 171/330 - (51%)
• Gaps: 33/330 - (10%)

  Fly     8 GSDLSKGQIFQV---LVRLSVASLITYYSVKWMMNQM------DPTSKNKKKAKVLAEEQLKRLA 63
            |.|:...|:...   .|...:|||.:..:::.:..:|      |.|         :..|.|..||
 Worm   396 GEDVDLEQVANECHGFVGADLASLCSEAAIQQIREKMELIDLEDDT---------IDAEVLNSLA 451

  Fly    64 -EQEGFKLRGQEFSDYELMIASHLVVPADITVSWADIAGLDSVIQELRESVVLPIQHKDLFKHSK 127
             ..|.|:....:.|...|..|   ||....| :|:||.||.:|.:||:|.|..|::|.:  |:.|
 Worm   452 VTMENFRFAMGKSSPSALREA---VVETPNT-TWSDIGGLQNVKRELQELVQYPVEHPE--KYLK 510

  Fly   128 LWQAP-KGVLLHGPPGCGKTLIAKATAKEAGMRFINLDVAILTDKWYGESQKLTSAVFSLASRIE 191
            ....| :|||.:|||||||||:|||.|.|....||::....|...|:|||:.....||..|....
 Worm   511 FGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAAA 575

  Fly   192 PCIIFIDEIDSFLRSR--NMNDHEATA-MMKTQFMMLWDGLSTNANSTVIVMGATNRPQDLDKAI 253
            ||::|.||:||..::|  ::.|....| .:..|.:...||:  ||...|.::||||||..:|.|:
 Worm   576 PCVLFFDELDSIAKARGGSVGDAGGAADRVINQVLTEMDGM--NAKKNVFIIGATNRPDIIDPAV 638

  Fly   254 VR--RMPAQFHIGLPSETQRKDILKLILQSEEVSQDVDLNRLSKLTNGFSGSDLREMCRNASVYR 316
            :|  |:....:|.||.|..|..|.|..|:...:|.|:|||.|:|.|.||||:||.|:|:.|....
 Worm   639 LRPGRLDQLIYIPLPDEASRLQIFKASLRKTPLSADLDLNFLAKNTVGFSGADLTEICQRACKLA 703

  Fly   317 MRQLI 321
            :|:.|
 Worm   704 IRESI 708

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
nmd	NP_609373.1	RecA-like_ATAD1	98..263	CDD:410928	67/170 (39%)
		AAA_lid_3	287..323	CDD:465537	18/35 (51%)
cdc-48.2	NP_495705.1	CDC48	44..773	CDD:273521	117/330 (35%)