DRSC/TRiP Functional Genomics Resources

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Protein Alignment nmd and cdc-48.3

DIOPT Version :9

Sequence 1:NP_001285801.1 Gene:nmd / 44021 FlyBaseID:FBgn0005322 Length:369 Species:Drosophila melanogaster
Sequence 2:NP_492211.1 Gene:cdc-48.3 / 172586 WormBaseID:WBGene00010562 Length:724 Species:Caenorhabditis elegans


Alignment Length:242 Identity:90/242 - (37%)
Similarity:143/242 - (59%) Gaps:14/242 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    86 LVVPADITVSWADIAGLDSVIQELRESVVLPIQHKDLFKHSKLWQAPKGVLLHGPPGCGKTLIAK 150
            |.||   .|||.||.|.:.:..|::::|:.|.:|.:.|:...: ..|.|:||:|||||.|||||:
 Worm   451 LEVP---NVSWNDIGGNEELKLEIQQAVIWPQKHPEAFERFGI-DPPAGILLYGPPGCSKTLIAR 511

  Fly   151 ATAKEAGMRFINLDVAILTDKWYGESQKLTSAVFSLASRIEPCIIFIDEIDSFLRSRNMNDHEAT 215
            |.|.||.|.|:.:....|..||.|:|:|....:||.|.::.|.|:|.||||:...||........
 Worm   512 ALASEAKMNFLAVKGPELFSKWVGDSEKAIRDLFSRARQVAPTIVFFDEIDAVGSSRGSEKSSGV 576

  Fly   216 A-MMKTQFMMLWDGLSTNANSTVIVMGATNRPQDLDKAIVR--RMPAQFHIGLPSETQRKDILKL 277
            : .:..|.:...|||  ..:|.||::.|||||..||.|::|  |:....::|||.|..|:.||: 
 Worm   577 SDRVLAQLLTELDGL--EKSSRVILLAATNRPDQLDSALLRPGRLDRAIYVGLPCEVTRRAILE- 638

  Fly   278 ILQSEEVSQDVDLNRLSKL---TNGFSGSDLREMCRNASVYRMRQLI 321
             ::::::..|..:..:.||   |:|:||::|..:||.|:::.||:.|
 Worm   639 -MRTKKMKFDDTVRTIDKLVEKTSGYSGAELVAVCRTAAMFAMRESI 684

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nmdNP_001285801.1 AAA 132..266 CDD:214640 56/136 (41%)
AAA 135..265 CDD:278434 53/132 (40%)
cdc-48.3NP_492211.1 TIP49 <247..720 CDD:332389 90/242 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0464
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

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