Protein Alignment nmd and LOC1280986

DIOPT Version :10

• Sequence 1: NP_609373.1
• Gene: nmd / 44021
• FlyBaseID: FBgn0005322
• Length: 369
• Species: Drosophila melanogaster
• Sequence 2: XP_320860.5
• Gene: LOC1280986 / 1280986
• VectorBaseID: AGAMI1_003191
• Length: 736
• Species: Anopheles gambiae
• Alignment Length: 367
• Identity: 103/367 - (28%)
• Similarity: 169/367 - (46%)
• Gaps: 70/367 - (19%)

  Fly    28 LITYYSVKWMMNQMDPTSKNKKKAKVLAEEQLK----RLAEQEGFKLRGQEFSDYELMIASHLVV 88
            |:.|..|:.|..|..|..      :.|||.|.|    .|....|                   :|
Mosquito   411 LLYYNLVREMHKQQLPFE------EALAEIQKKHRPSNLRNATG-------------------LV 450

  Fly    89 PADITVSWADIAGLDSVIQELRESVVLPIQHKDLFKHSKLWQAP-KGVLLHGPPGCGKTLIAKAT 152
            ..:.|:|.....|:|.:...||..:|..:.:...|:  :|...| :|:||:|||||.||.:||..
Mosquito   451 GREATLSLDSFGGMDELKALLRLCIVEQLANPARFQ--RLGIHPLRGILLYGPPGCAKTTLAKCL 513

  Fly   153 AKEAGMRFINLDVAILTDKWYGESQKLTSAVFSLASRIEPCIIFIDEIDSFLRSRNMNDHEATAM 217
            |.|.||.|::|..|.:...:.|:::||.:.||:.|....|.::|:|||||.:.:|      .|..
Mosquito   514 AAETGMTFLSLSAAQVYSPYVGDAEKLITRVFNEARTNAPAVVFLDEIDSLVGNR------GTGG 572

  Fly   218 MK-----------TQFMMLWDG----------LSTNANSTVIVMGATNRPQDLDKAIVR--RMPA 259
            ||           :..:|..||          ||.:| ..|:|:.|||||..:|.|::|  |:..
Mosquito   573 MKGGSSAVNMGVLSTLLMEMDGIGQAEQAASALSEDA-KRVVVIAATNRPDMVDDALLRPGRLTK 636

  Fly   260 QFHIGLPSETQRKDILKLILQSEEVSQDVDLNRLSKLTNGFSGSDLREMCRNASVYRMRQLITSR 324
            ..|:..|....|.:||:.|..:...::||.|..:::.|..:||:||:.:|..|::.     ..:.
Mosquito   637 LIHVPAPDGKGRLEILRKIATNVPFAEDVQLELVAEQTERYSGADLQNLCTQAALN-----AATE 696

  Fly   325 DPSATALDRNNVRITMDDLLGSHLKIKESKMHTSSLFLENRI 366
            |.:||.:...::|..:.|:..|..|.:....|:   :..||:
Mosquito   697 DLNATVVTMAHLRSALQDVRPSLTKEQIDWYHS---YEANRL 735

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
nmd	NP_609373.1	RecA-like_ATAD1	98..263	CDD:410928	61/188 (32%)
		AAA_lid_3	287..323	CDD:465537	10/35 (29%)
LOC1280986	XP_320860.5	None