Protein Alignment nmd and TER94

DIOPT Version :10

• Sequence 1: NP_609373.1
• Gene: nmd / 44021
• FlyBaseID: FBgn0005322
• Length: 369
• Species: Drosophila melanogaster
• Sequence 2: XP_315644.3
• Gene: TER94 / 1276315
• VectorBaseID: AGAMI1_004909
• Length: 804
• Species: Anopheles gambiae
• Alignment Length: 352
• Identity: 122/352 - (34%)
• Similarity: 184/352 - (52%)
• Gaps: 39/352 - (11%)

  Fly     2 DNFGLGGSDLSKGQIFQVLVRLSVASLITYYSVKWMMNQMDPTSKNKKKAKVLAEEQLKRLA-EQ 65
            ::.|..|:||              |||.:..:::.:..:||.......:   :..|.|..|| ..
Mosquito   399 ESHGHVGADL--------------ASLCSEAALQQIREKMDLIDLEDDQ---IDAEVLNSLAVSM 446

  Fly    66 EGFKLRGQEFSDYELMIASHLVVPADITVSWADIAGLDSVIQELRESVVLPIQHKDLFKHSKLWQ 130
            |.|:....:.|...|. .:.:.||   ..:|.||.||::|.:||:|.|..|::|.|.|....: |
Mosquito   447 ENFRYAMTKSSPSALR-ETVVEVP---NTTWTDIGGLENVKRELQELVQYPVEHPDKFLKFGM-Q 506

  Fly   131 APKGVLLHGPPGCGKTLIAKATAKEAGMRFINLDVAILTDKWYGESQKLTSAVFSLASRIEPCII 195
            ..:|||.:|||||||||:|||.|.|....||::....|...|:|||:.....:|..|....||::
Mosquito   507 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSASPCVL 571

  Fly   196 FIDEIDSFLRSR--NMNDHEATA-MMKTQFMMLWDGLSTNANSTVIVMGATNRPQDLDKAIVR-- 255
            |.||:||..:||  |:.|....| .:..|.:...||:....|  |.::||||||..:|.||:|
Mosquito   572 FFDELDSIAKSRGGNVGDAGGAADRVINQILTEMDGMGAKKN--VFIIGATNRPDIIDPAILRPG 634

  Fly   256 RMPAQFHIGLPSETQRKDILKLILQSEEVSQDVDLNRLSKLTNGFSGSDLREMCRNASVYRMRQL 320
            |:....:|.||.|..|:.||:..|:...|::|||||.::|:|.||||:||.|:|:.|....:||.
Mosquito   635 RLDQLIYIPLPDEKSREAILRANLRKSPVAEDVDLNYVAKVTQGFSGADLTEICQRACKLAIRQA 699

  Fly   321 ITS-----RDPSATALDRNNVRITMDD 342
            |.:     ||.:|:    .|..:.||:
Mosquito   700 IEAEIRRERDRAAS----QNAAMDMDE 722

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
nmd	NP_609373.1	RecA-like_ATAD1	98..263	CDD:410928	68/169 (40%)
		AAA_lid_3	287..323	CDD:465537	19/35 (54%)
TER94	XP_315644.3	CDC48	22..762	CDD:273521	122/352 (35%)